BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10770.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value Ahg325615 jgi|Araly1|325615|fgenesh1_pm.C_scaffold_6000835 2180 0.0 > Ahg325615 jgi|Araly1|325615|fgenesh1_pm.C_scaffold_6000835 Length=1428 Score = 2180 bits (1180), Expect = 0.0 Identities = 1346/1428 (94%), Gaps = 3/1428 (0%) Strand=Plus/Plus Query 118 ATGAGCATAAATAGGAATCTGTTGAATATCATAATAATCCTTTGTATATGTCTCAATTTG 177 |||||||||||||||||| |||||||||||||| | |||||||| |||||||||||||| Sbjct 1 ATGAGCATAAATAGGAATTTGTTGAATATCATAGTTGTCCTTTGTGTATGTCTCAATTTG 60 Query 178 GGTTGTAACGATGGAGCTCAAGAAAGAGAGA---CTGATTCTCATACTATCCAAGTCAGC 234 ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 61 GGTTGTAACGAGGGAGCTCAAGAAAGAGAGATTGATGATTCTCATACAATCCAAGTCAGC 120 Query 235 TCTCTCCTCCCTTCATCATCATCATCTTGTGTTCTTTCTCCCAGAGCGTCTACTACAAAG 294 |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTCTCTTCCCACCATCATCATCATCTTGTGTTCTTTCTCCCAGAGCGTCTACTACAAAG 180 Query 295 TCTTCACTGCACGTGACGCATAGACACGGCACGTGTTCGCGTCTAAACAATGGCAAGGCC 354 || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 181 TCCTCACTGCACGTGACGCATAGGCACGGCACGTGCTCGCGTCTAAACAATGGCAAAGCC 240 Query 355 ACGAGTCCAGACCATGTCGAGATCCTAAGACTCGACCAGGCTCGCGTAAACTCAATCCAC 414 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 ACGAGTCCAGACCATGTCGAGATCCTAAGACTCGACCAGGCTCGCGTAAACTCCATCCAC 300 Query 415 TCAAAACTATCGAAGAAACTCGCAACAGATCACGTCAGTGAAAGCAAGTCAACGGATCTA 474 |||||||| |||||||||||| ||||| ||||||||||| ||||| |||||||||||||| Sbjct 301 TCAAAACTGTCGAAGAAACTCACAACAAATCACGTCAGTCAAAGCCAGTCAACGGATCTA 360 Query 475 CCGGCTAAAGACGGAAGCACACTCGGTTCAGGTAACTACATCGTGACGGTCGGCCTCGGG 534 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 361 CCGGCTAAAGACGGAAGCACACTCGGTTCAGGTAACTACATCGTGACGGTCGGACTCGGG 420 Query 535 ACACCAAAGAACGATCTATCACTAATCTTCGACACTGGAAGCGATTTAACGTGGACTCAG 594 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 421 ACACCAAAGAACGATCTATCACTAATCTTCGACACCGGAAGCGATTTAACGTGGACTCAA 480 Query 595 TGTCAGCCATGTGTTCGAACTTGCTATGACCAGAAGGAACCAATCTTTAACCCTTCTAAG 654 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 TGTCAGCCATGTGTTCGAACTTGCTATGACCAAAAGGAACCAATCTTTAACCCTTCTAAG 540 Query 655 TCTACTTCTTACTACAACGTATCCTGCTCATCGGCTGCGTGTGGTTCTCTCTCTTCTGCT 714 |||||||||||||||||||| ||||| ||||| | ||||||||||| |||||||| ||| Sbjct 541 TCTACTTCTTACTACAACGTCTCCTGTTCATCATCAGCGTGTGGTTCCCTCTCTTCAGCT 600 Query 715 ACAGGAAACGCCGGAAGCTGTTCGGCTTCGAATTGCATCTACGGTATTCAATACGGCGAT 774 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ACAGGAAACGCCGGAAGTTGTTCGGCTTCGAATTGCATCTACGGTATTCAATACGGCGAT 660 Query 775 CAATCGTTCTCCGTCGGATTTCTCGCCAAGGAGAAGTTTACACTAACGAACTCCGACGTA 834 ||||| |||||| |||| |||||||||||||| || ||||||||||||| |||||||||| Sbjct 661 CAATCATTCTCCATCGGGTTTCTCGCCAAGGATAAATTTACACTAACGAGCTCCGACGTA 720 Query 835 TTTGACGGCGTTTATTTCGGTTGCGGCGAGAACAACCAAGGACTTTTCACCGGTGTCGCC 894 |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 721 TTTGACGGTGTTTATTTCGGTTGTGGTGAGAACAACCAAGGACTTTTCACCGGTGTCGCC 780 Query 895 GGACTTCTCGGTCTTGGTCGTGACAAGCTTTCGTTTCCGTCGCAGACGGCAACGGCTTAC 954 |||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 781 GGACTTCTCGGTCTCGGCCGTGACAAGCTTTCATTTCCGTCGCAGACGGCTACGGCTTAC 840 Query 955 AATAAGATCTTCTCTTACTGCCTCCCTTCCTCCGCTAGCTACACCGGACATCTCACATTC 1014 ||||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||| Sbjct 841 AATAAAATCTTCTCTTACTGTCTCCCTTCATCCGCAAGCTATACCGGACATCTCACCTTC 900 Query 1015 GGATCCGCCGGAATCTCCAGATCCGTTAAATTCACACCAATTTCAACCATCACTGATGGA 1074 |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 901 GGATCCGCCGGAATCTCCAGATCCGTCAAATTCACGCCGATTTCAACCATCACTGATGGA 960 Query 1075 ACTTCCTTCTACGGCCTTAATATCGTCGCAATCACCGTCGGCGGTCAGAAATTGCCGATT 1134 || || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||| Sbjct 961 ACCTCGTTCTACGGCCTTAATATCGTTGCAATCACCGTCGGCGGTCAAAAACTGCCGATT 1020 Query 1135 CCTTCAACTGTATTCTCTACTCCGGGAGCTTTAATCGATTCCGGCACCGTTATCACTCGT 1194 |||||||| || ||||| ||||||||||||||||||||||| || ||||||||||||||| Sbjct 1021 CCTTCAACCGTGTTCTCAACTCCGGGAGCTTTAATCGATTCAGGAACCGTTATCACTCGT 1080 Query 1195 CTCCCGCCGAAAGCCTACGCGGCGTTAAGAAGCTCGTTCAAGGCGAAGATGTCAAAGTAT 1254 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1081 CTCCCGCCGAAAGCTTACGCGGCGTTACGAAGCTCGTTCAAGGCGAAGATGTCAAAGTAT 1140 Query 1255 CCGACCACGTCGGGCGTCTCGATCTTGGACACGTGTTTCGATCTCAGCGGGTTTAAGACG 1314 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1141 CCGACCACGTCAGGCGTCTCGATCTTGGACACGTGTTTCGATCTCAGCGGATTTAAGACG 1200 Query 1315 GTGACTATCCCGAAAGTGGCGTTCTCTTTCAGCGGTGGCGCCGTCGTGGAGCTTGGTTCG 1374 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1201 GTGACGATCCCGAAAGTGGCGTTCTCTTTCAGCGGTGGCGCCGTCGTGGAACTTGGCTCA 1260 Query 1375 AAAGGGATATTTTACGTGTTTAAGATATCTCAGGTTTGTCTGGCGTTTGCAGGGAATAGC 1434 ||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| Sbjct 1261 AAAGGAATATTTTACGCGTTTAAGATATCACAGGTTTGTTTGGCGTTTGCAGGGAATAGC 1320 Query 1435 GATGACAGTAACGCTGCCATCTTTGGAAACGTTCAGCAGCAAACGCTAGAAGTTGTGTAT 1494 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GATGACAGTAACGCTGCCATCTTTGGAAACGTTCAGCAGCAAACGCTAGAAGTTGTGTAC 1380 Query 1495 GATGGTGCGGGTGGGCGGGTCGGGTTTGCTCCAAACGGGTGTAGTTAA 1542 ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1381 GATGGTGCGGGTGGGCGGGTCGGGTTTGCTCCAAATGGGTGTAGTTAA 1428 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66162755565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5