BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10790.1 Length=1847 Score E Sequences producing significant alignments: (Bits) Value Ahg487913 jgi|Araly1|487913|fgenesh2_kg.6__1047__AT5G10790.1 2952 0.0 > Ahg487913 jgi|Araly1|487913|fgenesh2_kg.6__1047__AT5G10790.1 Length=1771 Score = 2952 bits (1598), Expect = 0.0 Identities = 1715/1772 (97%), Gaps = 5/1772 (0%) Strand=Plus/Plus Query 77 AAGCGAATCTGAGTTTTGTTTTCATGTCCGCGAGGATTTCATTTCTGAAAAATCCCGATC 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCGAATCTGAGTTTTGTTTTCATGTCCGCGAGGATTTCATTTCTGAAAAATCCCGATC 60 Query 137 CGTGCAATCACTTATCTGATTATAAGCTTAGATATGGTACTGATGGTTACAAATCTTTCA 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGTGCAATCACTTATCTGATTATAAGCTTAGATATGGTACTGATGGTTACAAATCTTTCA 120 Query 197 ATAACTTGTTCAGATGCTTCAACGATGCAAGGATTAAGATCAAACTTCAAGGAATCGACA 256 ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| Sbjct 121 ATAACTTGTTCAGATGCTTCAACGATGGAAGAATTAAGATCAAACTTCAAGGATTCGACA 180 Query 257 TACCCAGATGCAGTTATTGTTCTGTTTATCAAAAGAGACTCTACATCTGTTTGATCTGTC 316 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 TACCCAGATGCAGTTATTGTTCCGTTTATCAAAAGAGACTCTACATCTGTTTGATCTGTC 240 Query 317 GTTCCATTTCTTGTTCAAGTCATATCCTTTTGCATACCCAGTTGAATAAAGGCCATGATA 376 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 GTTCCATTTCTTGTTCAAGTCATATCCTTTTGCATACCCAATTGAATAAAGGCCATGATA 300 Query 377 TCGCCATTGATGTCGAAAGATCTGAGCTTTATTGCTGTGCTTGCATCGATCAAGTGTATG 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 301 TCGCCATTGATGTCGAAAGATCTGAGCTTTATTGCTGTGCTTGCATCGATCAAGTGTACG 360 Query 437 ATTCTGAGTTCGACGAGGTTGTTGTGTCTAAGCAGCTTTTTGGTTTGGGTATGTCTGTTA 496 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 ATCCTGAGTTCGACGAGGTTGTTGTGTCTAAGCAGCTTATTGGTTTGGGTATGTCTGTTA 420 Query 497 AATCAGGGGCTGATGTTGTTGCGGTTAGATCGAACAAGAAGAGGAGATTGGACTCGCAAT 556 || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 421 AAGCCGGGGCTGATGTTGTTGCGGTTAGATCGAACAAGAAGAGGAGATTGGACTCTCAAT 480 Query 557 TGATCATAGGGTCGAATTTTTTGGTCTCACCTCGAGATCGAAGGGAGAAATGGACGTTTC 616 |||| || ||||| || ||||||||||||||||||||||| || |||||||||||||||| Sbjct 481 TGATTATTGGGTCCAAGTTTTTGGTCTCACCTCGAGATCGGAGAGAGAAATGGACGTTTC 540 Query 617 CTTTGGGGTTGAGAGGTTTGAACAATCTGGGAAGCACTTGTTTTATGAATGCTGTGTTGC 676 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 541 CTTTGGGCTTGAGAGGTTTGAATAATCTGGGAAGCACTTGTTTTATGAATGCTGTGTTGC 600 Query 677 AAGCACTTGTTCATGCTCCTCCTTTGAGAAACTTTTGGTTGAGTGGTCAACATAATCGTG 736 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 601 AAGCACTTGTTCATGCTCCTCCTTTGAGAAACTTTTGGTTGAGTGGTCAGCATAATCGTG 660 Query 737 ATCTTTGTCCTAGAAGAACAATGGGTTTGTTGTGTTTGCCTTGTGATCTTGATGTTATCT 796 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 661 ATCTTTGTCCCAGAAGAACTATGGGTTTGTTGTGTTTGCCTTGTGATCTTGATGTTATCT 720 Query 797 TCTCTGCTATGTTTTCTGGTGATCGGACTCCATATAGCCCTGCTCATTTGCTTTACAGTT 856 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCTCTGCTATGTTCTCTGGTGATCGGACTCCATATAGCCCTGCTCATTTGCTTTACAGTT 780 Query 857 GGTGGCAGCACTCAACGAATCTAGCTACATATGAGCAGCAAGATTCTCACGAGTTCTTCA 916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GGTGGCAGCACTCAACGAATCTAGCTACATATGAGCAGCAAGATTCTCACGAGTTCTTCA 840 Query 917 TTTCGCTATTGGACCGTATCCATGAGAACGAAGGGAAGTCGAAATGTTTGTATCAAGATA 976 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 841 TTTCGCTATTGGACCGTATCCATGAGAATGAAGGAAAGTCGAAATGTTTGTATCAAGATC 900 Query 977 ATGAGGAGTGTCAGTGTATCACCCACAAGGCATTCTCTGGTCTTTTAAGATCAGATGTCA 1036 ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 901 ATGAGGAGTGTCAATGTATTACTCACAAGGCATTCTCTGGTCTTTTAAGATCAGATGTCA 960 Query 1037 CCTGTACAACATGTGGATCCACATCAACAACATATGACCCGTTTATCGACATTTCACTTA 1096 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CCTGCACAACATGCGGATCCACATCAACAACATATGACCCGTTTATCGACATTTCACTTA 1020 Query 1097 CTTTAGATTCAATGAATGGATTCTCTCCCGCTGATTGCAGAAAGAACAGATACAGTGGTG 1156 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CTTTAGATTCAGTGAATGGATTCTCTCCCGCTGATTGCAGAAAGAACAGATACAGTGGTG 1080 Query 1157 GACCAAGTGTGAACGCAATCATGCCAACTCTCTCGGGTTGCTTAGATTTCTTCACACGGT 1216 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GACCAAGTGTGAACGCAACCATGCCAACTCTCTCGGGTTGCTTAGATTTCTTCACACGGT 1140 Query 1217 CAGAGAAACTCGGTCCAGACCAGAAACTAAACTGCCAAAGCTGTGGAGAAAAGAGAGAAT 1276 |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 CAGAAAAACTTGGTCCGGACCAGAAACTAAACTGCCAAAGCTGTGGAGAAAAGAGAGAAT 1200 Query 1277 CTTCGAAACAAATGTCTATAAGAAGACTTCCTCTGCTTCTTTGCTTGCACGTAAAGCGTT 1336 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1201 CTTCGAAACAAATGTCAATAAGAAGACTTCCTCTGCTTCTTTGCTTGCATGTAAAGCGTT 1260 Query 1337 TCGAACATTCTCTTACCCGTAAAACCTCGAGAAAAATTGATAGCTACTTGCAGTATCCGT 1396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TCGAACATTCTCTTACCCGTAAAACCTCGAGAAAAATTGATAGCTACTTGCAGTATCCGT 1320 Query 1397 TCCGCCTAAACATGTCTCCTTACCTCTCTTCCTCCATCATCGGAAAGCGGTTTGGGAACA 1456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TCCGCCTAAACATGTCTCCTTACCTCTCTTCCTCCATCATCGGAAAGCGGTTTGGGAACA 1380 Query 1457 GAATATTTGCCTTTGATGGAGAAGGTGAGTATGACAGTTCGTCATCATCATCTCCATCAG 1516 |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 1381 GAATATTTGCCTTTGATGGAGAGGGCGAGTATGACAGTTCATCATCATCATCTCCATCAG 1440 Query 1517 CGGAGTTTGAGATATTTGCGGTTGTGACACACA-AGGGGATGTTGGAATCAGGTCACTAT 1575 |||| |||||||||||||||||||| || ||| |||| ||||||||||||||||||||| Sbjct 1441 CGGAATTTGAGATATTTGCGGTTGTAACTCACTCAGGG-ATGTTGGAATCAGGTCACTAT 1499 Query 1576 GTGACGTATCTGAGGCTTAAAGGGTTGTGGTATAGATGTGATGATGCATGGATCAATGAG 1635 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1500 GTGACGTATCTGAGGCTTAAAGGGTTGTGGTATAGATGCGATGATGCATGGATCAATGAG 1559 Query 1636 GTTGAAGAAGAAGTGGTGAGAGGATGTGAGTGTTACATGTTGTTCTATGCACAAGAGACA 1695 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | Sbjct 1560 GTTGAAGAAGAAGTGGTGAGAGGATGTGAATGTTACATGTTGTTCTATGCACAAGAAAGA 1619 Query 1696 GTGATTCAAAAAGCTCATAAGGAGTTGAGTTATCAAGTTATCTCCATGGCTGATGCATTT 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 GTGATTCAAAAAGCTCATAAGGAGTTGAGTTATCAAGTTATCTCCATGGCTGATGCATTT 1679 Query 1756 CCCTTTGCTGATTGCTGACTCTTA--A-CTTGGCCAAAGATTTTGACGCATTTTCCCTTA 1812 |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 1680 CCCTTTGCTGATTGCTGACTCTTATTAACTTGGCCAAAGATTTTGACGCATTTTCCCTTA 1739 Query 1813 CTACtttttttAATTGATTTAAGGTTTATGCC 1844 |||||||||| ||| |||||||||||||||| Sbjct 1740 ATACTTTTTTTTATTCATTTAAGGTTTATGCC 1771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69362336145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5