BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10860.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487918 jgi|Araly1|487918|fgenesh2_kg.6__1052__AT5G10860.1 1408 0.0
> Ahg487918 jgi|Araly1|487918|fgenesh2_kg.6__1052__AT5G10860.1
Length=915
Score = 1408 bits (762), Expect = 0.0
Identities = 869/919 (95%), Gaps = 13/919 (1%)
Strand=Plus/Plus
Query 78 AAGCTCCACTACGATCTCTTCTTCTTCTCTAATCTCAGTTGAAAGATGCAAGGTGTGATT 137
|||||| |||||||||| |||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 1 AAGCTCAACTACGATCTGTTCTTCTTCTCTAATCTCAGGTGAAAGATGCAAGCTGTGGTT 60
Query 138 CGATCCTTCGTCTCCGGTGGAAATGTTGTGAAAGGC-TCTGTGCTGCAACATCTCCGTGT 196
||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 AGATCCTTGGTCTCCGGTGGAAATGTTGTGAAA-GCTTCTGTGCTGCAACATCTCCGTGT 119
Query 197 GATTAACCCGGCGATTCAGCCTTCTGTGTTTTGTTCACGCTCTGAATCAACTCAACCTGC 256
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 120 GATTAACCCGGCGATTCAGCCTTCTGTGTTTTGTTCTCGCTCTGAGTCTACTCAACCTGC 179
Query 257 ACGTATGGAGGAATCTGGATTCGAGAGCACAACTATTTCCGATGTCATGAAATCCAAAGG 316
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCGTATGGAGGAAACTGGATTCGAGAGCACAACTATTTCCGATGTCATGAAATCCAAAGG 239
Query 317 CAAAAGTGCTGATGGATCTTGGCTTTGGTGTACTACTGATGACACTGTTTATGATGCTGT 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAAAGTGCTGATGGATCTTGGCTTTGGTGTACTACTGATGACACTGTTTATGATGCTGT 299
Query 377 TAAATCCATGACACAACACAATGTTGGTGCCTTGGTGGTTGTGAAACCTGGTGAGCAACA 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAATCCATGACACAACACAATGTTGGTGCCTTGGTGGTTGTGAAACCTGGTGAGCAACA 359
Query 437 AGCTCTTGCTGGTATCATTACAGAGAGAGATTATCTACGGAAGATCATTGTGCAAGGGAG 496
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 360 AGCTCTTGCTGGTATCATTACTGAGAGAGATTACCTACGGAAGATTATAGTGCAAGGGAG 419
Query 497 ATCATCCAAATCAACAAAAGTTGGAGACATTATGACTGAAGAGAATAAGCTTATCACTGT 556
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 ATCATCCAAATCTACAAAAGTTGGAGACATTATGACTGAAGAGAACAAGCTTATCACTGT 479
Query 557 GACACCGGAGACCAAGGTCTTGCGTGCTATGCAACTGATGACAGATAACCGAATCAGGCA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACACCGGAGACCAAGGTCTTGCGTGCTATGCAACTGATGACAGATAACCGAATCAGGCA 539
Query 617 TATTCCGGTAATCAAAGACAAGGGCATGATTGGAATGGTGTCCATAGGAGATGTTGTCCG 676
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 540 TATTCCGGTAATCAAAGACAAGGGCATGATCGGAATGGTGTCCATAGGAGACGTGGTCCG 599
Query 677 TGCAGTGGTTCATGAGCATAGAGAGGAGCTTCAACGCCTAAATGCGTATATTCAGGGAGG 736
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 TGCAGTGGTTCATGAGCATCGAGAGGAGCTTCAACGCCTAAATGCGTTTATTCAGGGAGG 659
Query 737 TTACTAGATCTTGAATAATGGAAAGAAAAGAGTTCCCTGTTGTGTCGTCTGGTCTTGTGC 796
||||||||||||||| | ||| |||| ||||||||||||||||||| | ||||||||||
Sbjct 660 TTACTAGATCTTGAAGATTGGTAAGATAAGAGTTCCCTGTTGTGTC-T--GGTCTTGTGC 716
Query 797 TGCTGAATCTGAAAAGCTTCCAGATCAGTGTAAATATGCAGTCCTCgttgttattgttgt 856
|||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 717 TGCTGAATTTGAAAAGCTTTTAGATCAGTGTAAATATGCAGTCCTCGTTGTTGTTGTTGT 776
Query 857 tgttgttgt-gt-tt--g----atgttttgtgttgtttcgttgtttAACTTGTCAAAACT 908
||||||||| || || | ||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGTTGTTGTTGTGTTATGTTTGATGTTTTGTGTTGTTTCGTTGTTTAACTTGTCAAAACT 836
Query 909 AAGGCCTTGTGCTGCTTCTCTTCTTGCGCTTACTTAGCAAGAGAATAAAACCAAAAACTC 968
||||||||||||| || || ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 837 AAGGCCTTGTGCTTCTCCTTTTCTTGCGCTTACTTTGCAAGAGAATAAAACCAAAGACTC 896
Query 969 TGATCTCTTTATGAAAGAT 987
||||||| |||||||||||
Sbjct 897 TGATCTCGTTATGAAAGAT 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5