BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G10930.1 Length=1749 Score E Sequences producing significant alignments: (Bits) Value Ahg487924 jgi|Araly1|487924|fgenesh2_kg.6__1058__AT5G10930.1 2466 0.0 Ahg894415 jgi|Araly1|894415|Al_scaffold_0006_2411 992 0.0 Ahg896438 jgi|Araly1|896438|Al_scaffold_0005_404 734 0.0 > Ahg487924 jgi|Araly1|487924|fgenesh2_kg.6__1058__AT5G10930.1 Length=1717 Score = 2466 bits (1335), Expect = 0.0 Identities = 1567/1675 (94%), Gaps = 32/1675 (2%) Strand=Plus/Plus Query 1 ATTTGCACActtcttcttcttcttcctcatttctcttcctctcccatattccatggaatt 60 ||||||||||||| |||||||| | || | ||||||||||||| |||||||||| || Sbjct 1 ATTTGCACACTTCATCTTCTTC-T--TC---T-TCTTCCTCTCCCAAATTCCATGGAGTT 53 Query 61 gctctacttcttcACCTATGAGAGTAATATA-TC--CTCATGTACTCAAAATACTAATCA 117 ||||||||||||||||||||||||||| || || ||||||||||||||||||||| || Sbjct 54 TCTCTACTTCTTCACCTATGAGAGTAATCTATTCTACTCATGTACTCAAAATACTAACCA 113 Query 118 AACTTCATGCTTCAACACCACCTTTTCTTAATCCT-C--CTTCTTCATC-T--TCTTCTT 171 ||| ||||| ||||||||||||||||||||||||| | |||||||||| | ||||||| Sbjct 114 AACCTCATGGTTCAACACCACCTTTTCTTAATCCTCCTTCTTCTTCATCATCATCTTCTT 173 Query 172 CCACTATTTCATTTTCCCT-AG-----TCGGTGTAAATATCAAATGGAGGAAGAACGGCG 225 | | | ||||||||||||| || |||| || | ||||||||||||||||||||||| Sbjct 174 CTAATCTTTCATTTTCCCTAAGCTTCATCGGAGT-AGTATCAAATGGAGGAAGAACGGCG 232 Query 226 AGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCCAAAGT 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 233 AGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCGAAAGT 292 Query 286 CTATTACGGCAAAGAGATCATCGGCGGCGAGTGCGTCGCAATCAAAGTCATCAACAAGGA 345 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 293 CTATTACGGCAAAGAGATCATCGGTGGCGAGTGCGTCGCCATCAAAGTCATCAACAAGGA 352 Query 346 TCAAGTAATGAAGAGACCTGGAATGATGGAACAAATCAAACGCGAGATTTCAATCATGAA 405 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 353 TCAAGTAATGAAGAGACCTGGAATGATGGAACAGATCAAACGCGAGATTTCAATCATGAA 412 Query 406 GCTCGTTCGTCATCCCAACATAGTTGAATTGAAAGAAGTCATGGCTACGAAGACCAAGAT 465 |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct 413 ACTCGTTCGTCATCCAAACATCGTTGAATTAAAAGAAGTCATGGCTACGAAGACGAAGAT 472 Query 466 CTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTTTTCTGCAAAATCTCTAAAGGTAA 525 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 473 CTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTGTTCTGCAAAATCTCTAAAGGTAA 532 Query 526 GTTACACGAAGACGCTGCTCGTAGATATTTCCAGCAATTGATCTCAGCCGTTGATTATTG 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 GTTACACGAAGACGCTGCTCGTAGATATTTCCAGCAATTGATCTCAGCCGTTGATTATTG 592 Query 586 CCATAGTAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAATCTTCTTTTAGATGAGAA 645 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 593 CCATAGCAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAACCTTCTTTTAGATGAGAA 652 Query 646 TGGAGATTTGAAAATCTCCGATTTCGGATTATCTGCGTTACCGGAACAGATTCTTCAAGA 705 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 653 TGGAGATTTGAAAATCTCCGATTTCGGATTATCTGCGTTACCGGAGCAGATTCTTCAAGA 712 Query 706 CGGATTGCTTCATACGCAGTGTGGAACTCCGGCGTATGTTGCGCCGGAGGTATTAAAGAA 765 |||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||| Sbjct 713 TGGATTGCTTCATACGCAGTGTGGAACTCCGGCTTACGTTGCGCCGGAGGTTTTACGGAA 772 Query 766 GAAAGGATACGACGGCGCGAAAGCTGATATCTGGTCGTGCGGCGTCGTTTTGTATGTTCT 825 ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || Sbjct 773 GAAAGGATACGACGGCGCGAAGGCGGATATCTGGTCATGCGGCGTCGTTTTGTATGTGCT 832 Query 826 TCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATGTATCGGAAGATTTT 885 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 TCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATGTATCGGAAGATTTT 892 Query 886 CAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAGCGAGGAGGTTGATTTCGAA 945 ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| || Sbjct 893 CAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCGCCGGAATCGAGGCGGTTGATTTCTAA 952 Query 946 ACTCCTCGTTGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGCCTTG 1005 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 953 ACTCCTCGTCGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGACTTG 1012 Query 1006 GCTCCGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCA 1065 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 GCTTCGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCA 1072 Query 1066 AAGCAGCAAAAACAACgaagaagaagaagaagaCGGAGATTGTGAAAATCAAACAGAGCC 1125 |||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1073 GAGCAACAACAACAACGACGAAGAAGAAGAAGACGGAGATTGGGAAAATCAAACAGAGCC 1132 Query 1126 GATATCGCCGAAATTCTTCAACGCTTTCGAATTCATATCCTCGATGTCTTCCGGATTTGA 1185 ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1133 GATTTCGCCGAAGTTCTTCAACGCTTTCGAATTCATCTCCTCGATGTCTTCCGGATTCGA 1192 Query 1186 CT-TATCGAGCTTGTTCGAGAGCAAGAGGAAAGTGCAATCGGTGTTTACGTCACGGTCGT 1244 | | || |||||||||||||| ||||||||||||||||||||||| |||||| |||| Sbjct 1193 -TCTCTCAAGCTTGTTCGAGAGTAAGAGGAAAGTGCAATCGGTGTTCACGTCAAAATCGT 1251 Query 1245 CGGCGACGGAGGTAATGGAGAAGATAGAAACGGTTACGAAGGAGATGAACATGAAAGTGA 1304 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1252 CGGCGACGGAGCTAATGGAGAAGATCGAAACGGTTACGAAGGAGATGAACATGAAAGTGA 1311 Query 1305 AGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGT 1364 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 AGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGC 1371 Query 1365 TGTCGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATATCGGTGGTGGAGTTTTGCA 1424 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1372 TGTCGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATCTCGGTGGTGGAGTTTTGCA 1431 Query 1425 AATCGGCGGGAGATACTTTGGAGTACGATAGGTTATACGAAGAAGAAGTACGGCCGGCGT 1484 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1432 AATCGGCGGGAGATACTTTGGAGTACGATAGGTTATACGAAGAAGAAGTCCGGCCGGCGT 1491 Query 1485 TAAACGACATCGTCTGGTCATGGCACGGTGATAATAATAACA---CTTCTTCCGAGGATT 1541 |||| |||||||| |||||||||||||||||||||||||| | |||||||| |||||| Sbjct 1492 TAAATGACATCGTTTGGTCATGGCACGGTGATAATAATAATAATACTTCTTCCAAGGATT 1551 Query 1542 GTTGAATCAGTAGTTTTTGGTTCTGATTTAACCGGTTATCGGTTAACGTAGTATAACTAA 1601 |||||||||| ||| ||||||||| | ||||||| || ||||||||||| |||| ||| Sbjct 1552 GTTGAATCAGGAGTGTTTGGTTCTAAGTTAACCGATTTTCGGTTAACGT--TATA--TAA 1607 Query 1602 GAACTGTTACATTGAACCCAAattttctttggtttaataaaattttggttttact 1656 | |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1608 GGACTGTTACATTGAACCTAAATTTTCTTTGGTTTAATAAAATTTTGGTTTTACT 1662 > Ahg894415 jgi|Araly1|894415|Al_scaffold_0006_2411 Length=1443 Score = 992 bits (537), Expect = 0.0 Identities = 1074/1324 (81%), Gaps = 73/1324 (6%) Strand=Plus/Plus Query 224 CGAGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCCAAA 283 ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||| Sbjct 97 CGAGTTCTGTTCGGAAAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGCAAAA 156 Query 284 GTCTATTACGGCAAAGAGATCATC-GGCGGCGAGTGCGTCGCAATCAAAGTCATCAACAA 342 |||||||||||||||||||| | | ||| || |||| ||||||||| |||||||||| Sbjct 157 GTCTATTACGGCAAAGAGAT-AACAACCGGAGAAAGCGTTGCAATCAAAATCATCAACAA 215 Query 343 GGATCAAGTAAT-GAA-GAGACCTGGAATGATGGAACAAATCAAACGCGAGATTTCAATC 400 |||||||| || || | || || |||||||||||||||||||| ||||| |||||| Sbjct 216 AGATCAAGTCATCAAACGTGA--AGGTATGATGGAACAAATCAAACGAGAGATCTCAATC 273 Query 401 ATGAAG-CTCGTTCGTCATCCCAACATAGTTGAATTGAAAGAAGTCATGGCTACGAAGAC 459 ||| || || ||||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 274 ATG-AGACTTGTTCGTCATCCAAACATCGTCGAATTAAAAGAAGTCATGGCAACAAAAAC 332 Query 460 CAAGATCTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTTTTCTGCAAAATC-TCTA 518 |||||||||||| ||||||| | |||||||||||| || ||||||| ||| ||| | || Sbjct 333 AAAGATCTTCTTCATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGT-TA 391 Query 519 AAGGTAAG-TTACACGAAGACGCTGCTCGT-AGATATTTCCAGCAATTGATCTCAGCCGT 576 |||| ||| ||| | |||||| |||||||| || || ||||| ||||| ||||||||||| Sbjct 392 AAGGAAAGCTTA-AAGAAGACTCTGCTCGTAAG-TACTTCCAACAATTAATCTCAGCCGT 449 Query 577 TGATTATTGCCATAGTAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAATCTTCTT-T 635 ||||| ||| |||||||||||||| ||||| || ||||| ||||| ||||||| |||| Sbjct 450 TGATTTTTGTCATAGTAGAGGCGTGTCTCACCGAGATCTAAAACCGGAGAATC-TCTTGG 508 Query 636 TAGATGAGAATGGAGAT-TTGAAAATCTCCGATTTCGGAT-TATCTGCGTTACCGGAACA 693 | || ||||| || ||| || || | ||||||||||| | | ||||| ||||| ||||| Sbjct 509 TCGACGAGAACGGTGATCTT-AAGGTGTCCGATTTCGG-TCTCTCTGCTTTACCTGAACA 566 Query 694 GATTCTT-CAAGACGGATTGCTTCATACGCAGTGTGGAACTCCGGCGTATGTTGCGCCGG 752 |||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 567 GATT-TTACAAGACGGTTTGCTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCGCCGG 625 Query 753 AGGTATTAAAGAAGAAAGGATACGACGGCGCGAAAGCTGATATCTGGTCGTGCGGCGTCG 812 |||| || | ||||||||| |||||||| || ||||||||||| |||||||| || || | Sbjct 626 AGGTTTTGAGGAAGAAAGGTTACGACGGAGCTAAAGCTGATATTTGGTCGTGTGGTGT-G 684 Query 813 TT-TTGTATGTTCTTCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATG 871 | ||||| || ||||||||||| | ||| ||||||||||||||||| || ||||| ||| Sbjct 685 ATCTTGTACGTACTTCTCGCCGGTTTTTTACCGTTTCAAGATGAGAACCTAATGAAAATG 744 Query 872 TATCGGAAGATTTTCAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAG-CGAG 930 ||||||||||| |||| | |||| ||||| ||||||||||||||||| ||||| | | | Sbjct 745 TATCGGAAGATCTTCAAATCGGAGTTTGAGTTTCCGCCGTGGTTTTCACCGGA-GTCCAA 803 Query 931 GAGGTTGATTTCGAAACTCCTCGTTGTAGATCC-AGATCGACGGATCTCGATTCCGGCGA 989 ||| ||||||||||| || | ||||| ||||| | || |||||||||||| || |||| Sbjct 804 GAGATTGATTTCGAAGCTTTTAGTTGTTGATCCTA-ATAAACGGATCTCGATACCAGCGA 862 Query 990 TTATGAGAACGCCTTGGCTCCGGAAAAACTTCA-CTCCGCCGTTAGCTTTCAAAATCGAC 1048 |||||||||| || ||| | || |||||||||| ||| ||| | |||||||| ||||| Sbjct 863 TTATGAGAACACCGTGGTTTCGTAAAAACTTCAACTCT-CCGATCGCTTTCAAGATCGAT 921 Query 1049 GAACCGATTTGTTCTCAAAGCAGCAAAAACAACgaagaagaagaagaagaCGGAGATTGT 1108 || | ||| | || || | |||| |||||| ||| | || | | Sbjct 922 GA---G-------CTC---G-AG-AACCAGAACGTAGAAGACGAA-AC-ACC-A-AC--- 959 Query 1109 GAA-AATCAAACAGAGCCGATATCGCCGAAATTCTTCAACGC-TTTCGAATTCATATCCT 1166 || || ||| || ||| | |||||||| ||||| ||||| ||| |||||||| |||| Sbjct 960 -AACAA-CAA-CA---CCGGTCTCGCCGAAGTTCTTTAACGCGTTT-GAATTCATCTCCT 1012 Query 1167 CGATGTCTTCCGGATTTGACTTATCGAGCTTGTTCGAGAGCAAGAGGAAAG-TGCAA-TC 1224 ||||||| || ||||| || || ||||| |||||||||| ||| ||||| | || | || Sbjct 1013 CGATGTCATCAGGATTCGATTTGTCGAGTTTGTTCGAGAACAAAAGGAA-GCTG-AGCTC 1070 Query 1225 GGTGTTTACGTCACGGTCGTCGGCGACGGAGGTAATGGAGAAGATAGAAACGGTTACG-A 1283 ||||||||||||||| ||||||| ||||| |||||| |||| | |||| || || | | Sbjct 1071 TATGTTTACGTCACGGTGGTCGGCGTCGGAGATAATGGCGAAGCTTGAAA-GGATAGGGA 1129 Query 1284 AGGAGATGAACATGAAAGTGAAGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAA 1343 | |||||||||||||| || ||||| || ||||||||||||||||||||| |||| || Sbjct 1130 AAGAGATGAACATGAAGGTTAAGAGGACTAAGGATTTTAAAGTGAAGATGTTGGGGACAA 1189 Query 1344 CGGAAGGGAGAAAAGGACGGTT-GTCGATGACGGCGGAAGTGTTT-GAAGTAGCGCCGGA 1401 |||||||||| ||||||| | | | || |||||||||| || ||| || || |||||| | Sbjct 1190 CGGAAGGGAGGAAAGGACAGATCG-CGGTGACGGCGGAGGT-TTTCGAGGTTGCGCCGCA 1247 Query 1402 GATAT-CGGTGGTGGAGTTTTGCAAATCGGCGGGAGATACTTTGGAGTACGATAGGTTAT 1460 | | | | || || ||||| || |||||||||||||||||||||||||| || |||||| Sbjct 1248 GGT-TGCCGTCGTTGAGTTATGTAAATCGGCGGGAGATACTTTGGAGTATAATCGGTTAT 1306 Query 1461 ACGAAGAAGAAGTACGGCCGGCGTTAAACGACATCGTCTGGTCATGGCACGGTGATAATA 1520 | |||||| |||| ||||||||||| | || || || ||||| ||||||||||||||| Sbjct 1307 AAGAAGAACAAGTCCGGCCGGCGTTGGAGGAGATAGTTTGGTCGTGGCACGGTGATAATC 1366 Query 1521 ATAA 1524 |||| Sbjct 1367 ATAA 1370 > Ahg896438 jgi|Araly1|896438|Al_scaffold_0005_404 Length=738 Score = 734 bits (397), Expect = 0.0 Identities = 479/518 (92%), Gaps = 7/518 (1%) Strand=Plus/Plus Query 890 GCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAGCGAGGAGGTTGATTTCGAAACTC 949 ||||||||||||||||||||||||||||| || ||| ||||| |||||||||| |||||| Sbjct 178 GCGGATTTTGAATTTCCGCCGTGGTTTTCGCCTGAATCGAGGCGGTTGATTTCTAAACTC 237 Query 950 CTCGTTGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGCCTTGGCTC 1009 | ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 238 CCCGTCGTAGATCCAGATCGACGGATCTTGATTCCGGCGATTATGAGAACGACTTGGCTT 297 Query 1010 CGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCAAAGC 1069 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 298 CAGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTC--AG- 354 Query 1070 AGCAAAAACAACgaa-gaagaagaagaagaCGGAGATTGTGAAAATCAAACAGAGCCGAT 1128 ||||| |||||| || ||||||||||| |||| |||||| |||||||||||||||||||| Sbjct 355 AGCAACAACAAC-AACGAAGAAGAAGACGACGTAGATTGGGAAAATCAAACAGAGCCGAT 413 Query 1129 ATCGCCGAAATTCTTCAACGCTTTCGAATTCATATCCTCGATGTCTTCCGGATTTGACT- 1187 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct 414 TTCGCCAAAATTCTTCAACGCTTTCGAATTCATCTCCTCGATGTCTTCCGGATTCGA-TC 472 Query 1188 TATCGAGCTTGTTCGAGAGCAAGAGGAAAGTGCAATCGGTGTTTACGTCACGGTCGTCGG 1247 | ||||||||||||||||| |||||||||||| |||||||||| |||||| |||| || Sbjct 473 TCTCGAGCTTGTTCGAGAGTAAGAGGAAAGTGAAATCGGTGTTCACGTCAAAATCGTTGG 532 Query 1248 CGACGGAGGTAATGGAGAAGATAGAAACGGTTACGAAGGAGATGAACATGAAAGTGAAGA 1307 |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| Sbjct 533 CGACGGAGGTAATGGAGAGGATCGAAACGGTTACGAAAGAGATGAACATGAAAGTGAAGA 592 Query 1308 GAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGTTGT 1367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 593 GAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGCTGT 652 Query 1368 CGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATA 1405 ||||||||||||||||||||||||||||||| |||||| Sbjct 653 CGATGACGGCGGAAGTGTTTGAAGTAGCGCCAGAGATA 690 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65629492135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5