BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G10950.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940565 jgi|Araly1|940565|scaffold_601109.1 874 0.0
> Ahg940565 jgi|Araly1|940565|scaffold_601109.1
Length=1234
Score = 874 bits (473), Expect = 0.0
Identities = 778/918 (85%), Gaps = 50/918 (5%)
Strand=Plus/Plus
Query 91 TTGCT-T-TCGAAGATGGTTGGTTCTAGGAAGCGTTCATCAGCCAAGAACAGACTTGTTT 148
||||| | |||||||||| |||||||||||||||||||||||| || ||||||| | ||
Sbjct 7 TTGCTCTCTCGAAGATGGCTGGTTCTAGGAAGCGTTCATCAGCAAACAACAGAC--G-TT 63
Query 149 CTTCTTCAACTCGTTCTTCTGGGAAGGATAAGGTTTCTGATGCTCGTAAATATGGTGAAG 208
|||| | | |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 64 CTTC-T--AGTCGTTCTTCTGGAAAGGATAAGGTTTCTGATGCTCCAAAATATGGTGAAG 120
Query 209 CCTTGGTGGGTTCAAGGA-TACGAGTTTGGTGGCCGATGGACAGCAAATTCTATAAGGGT 267
|||||||||||||||||| || |||||||||||||| | ||| |||||||||| ||||||
Sbjct 121 CCTTGGTGGGTTCAAGGATTA-GAGTTTGGTGGCCGTTAGACCGCAAATTCTACAAGGGT 179
Query 268 GTGGTGGATTCCTATGTCTCTTCCAAGAAGAAACATCGGGTTTTCTATGAAGATGGTGAT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGGTGGATTCCTATGTCTCTTCCAAGAAGAAACATCGGGTTTTCTATGAAGATGGTGAT 239
Query 328 AAAGAGACCTTGGATCTGAAGAAGGAGAGATGGGAGTTGATTGAAGAAGATGATGCTGAA 387
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 240 AAAGAGACCTTGGATTTGAAGAAGGAAAGATGGGAGTTGATTGAAGAAGATGATACTGAA 299
Query 388 TCTGAATCTGATGAGATCTCCCTACAGGAGGAATCTGCTGGTGAGAGTTCTGAAGGCACT 447
||||||||||||||||||||||| ||||| |||||||||| |||||||||||| || |||
Sbjct 300 TCTGAATCTGATGAGATCTCCCTTCAGGATGAATCTGCTGATGAGAGTTCTGAGGGTACT 359
Query 448 CCAGAACCGCCTAAAGGGAAAGGGAAGGCATCTTTAAAAGGAAGGACGGATGAAGCTATG 507
||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||
Sbjct 360 CCAGAACCGCCTAAAGGGAAAGGGAAGTCATCCTTAAAAGGAAGGACAGATGATGCTATG 419
Query 508 CCCAAAAAGAAACAGAAGATAGATTCTTCATCAAAGAGCAAGGCCAAAGAGGTGGAGAAG 567
|| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 CCGAAAAAGAGACGGAAGATAGATTCTTCATCAAAGAGCAAATCCAAAGAGGTGGAGAAG 479
Query 568 AAGGCCTCAAAGCCCGAAACTGAGAAAAATGGCAAAATGGGTGATATTGGTGGG-AAGAT 626
||| |||| ||||| |||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 480 AAGACCTCGAAGCCTGAAACTGAGAAAAATGGCAAAATGGGTGATATCGG-GGGTAAGAT 538
Query 627 TGTAGCAGCGGCATCACGCATGAGTGAAAGGTTTCGGAGCAAGGGGAATGTGGATCAAAA 686
|||||||||||| ||||||||||||| ||| || || |||||||||||| || ||||
Sbjct 539 TGTAGCAGCGGCCTCACGCATGAGTGGAAGATTCCGAAGCAAGGGGAATAACAATGAAAA 598
Query 687 AGAGACATCAAAGGCCTCGAAAAAACCAAAGATGTCTTCAAAGTTGACCAAGAGGAAACA 746
||||||||| ||| ||| ||||||||| | || |||| | ||||| | | |
Sbjct 599 AGAGACATCCAAGTCCTTGAAAAAACCGAGGA---CTTC----T--ACCAA-A--ATAG- 645
Query 747 CACTGATGACCAAGATGAAGATGAAGAAGCTGGTGATGATATTGATACTTCTAGCGAAGA 806
| | | | ||| ||| || | ||| |||||||| |||| |||| ||||||||
Sbjct 646 C-C--A--A--AAG--GAA--TG--GCT-CTGATGATGATAATGATGCTTCAAGCGAAGA 691
Query 807 GGCGAAGCCTAAGGTGTTAAAATCCTGCAACTCCAATGCTGATGAAGTTGCTGAAAATTC 866
||| ||||| |||| | || ||| |||||||||| |||||||||| ||||||||||
Sbjct 692 GGCCAAGCCCAAGGCCATGAAGTCCAGCAACTCCAACGCTGATGAAGATGCTGAAAATAA 751
Query 867 TTCTGA-TGAAGATGAGCCCAAGGTTCTAAAAACCAACAACTCTAAGGCTGATAAAGATG 925
| || | ||| |||||| | ||| ||| ||| ||||||||| |||| ||||| |
Sbjct 752 TACT-ACTGATGATGAGGC-----TTCGAAAT-CCAGCAACTCTAACACTGACAAAGAGG 804
Query 926 AAGATGAAGA-G--GAGAATGAAACATCTGATGATGAGGCTGAGCCCAAGGCCCTGAAAT 982
||| | || | ||||||||||| ||||| |||||||| |||| ||||||| |||||
Sbjct 805 AAGGGGCTGATGCTGAGAATGAAACTTCTGAAGATGAGGCCGAGCTCAAGGCCTTGAAAC 864
Query 983 TGAGCAACTCCAACTCTG 1000
|||||||||||| |||
Sbjct 865 CCAGCAACTCCAACGCTG 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5