BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11020.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325637 jgi|Araly1|325637|fgenesh1_pm.C_scaffold_6000857 2069 0.0
> Ahg325637 jgi|Araly1|325637|fgenesh1_pm.C_scaffold_6000857
Length=1311
Score = 2069 bits (1120), Expect = 0.0
Identities = 1256/1318 (95%), Gaps = 23/1318 (2%)
Strand=Plus/Plus
Query 252 ATGAAGCAAATTGTTATAACAGCTCTTGTTTTACTACAAGCTTATGTTCTTCATCAATCC 311
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGCAATTTGTTATAACAGCTCTTGTTTTACTACAAGCTTATGTTCTTCATCAATCC 60
Query 312 ACATGTGTTATGTCCCTTACTACACAAGAATCTCCTTCTCCTCAACCTTCTGCTTTCACT 371
|||| |||| ||||||| ||| |||| ||||||| ||||||||| |||||||||||||||
Sbjct 61 ACATTTGTTGTGTCCCTCACTTCACATGAATCTCTTTCTCCTCAGCCTTCTGCTTTCACT 120
Query 372 CCCGCCTTATCTCCTGATTAT-CAAC-AGAGAGAGAAGGAATTGCATAAACAAGAGAGTA 429
|||| ||||||||||| || | |||| || ||||||||||||||||||||||||| ||||
Sbjct 121 CCCGACTTATCTCCTGGTT-TGCAACAAG-GAGAGAAGGAATTGCATAAACAAGATAGTA 178
Query 430 ACAACATGAGACTGGTTATTTCACTAGCAGCTACATTTTCCTTAGTTGGTATAATCTTAC 489
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 179 ACAACATGAGACTGGTTATTTCACTAGCAGCTGCATTTTCCTTAGTTGGGATAATCTTAG 238
Query 490 TTTGCTCTCTGCTTTATTGGTTTTGCCATAGGAGAAGAAA-CCTCAAGAGCTCAGGTTGT 548
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 239 TTTGCTCTCTGCTTTATTGGTTTTGCCATAGGAGAAGAAACCCT-AAGAGCTCCGGTTGT 297
Query 549 GGGTGTAGTGGAAT--CA----CA---TTCTTGAATCGGTTTAGTCGCTCAAAAACATTA 599
|||||||||| ||| || || |||||||| || |||||||||||||||||||||
Sbjct 298 GGGTGTAGTGAAATCACATTCTCACGGTTCTTGAACCGCTTTAGTCGCTCAAAAACATTA 357
Query 600 GACAAGAGAACTACAAAGCAGGGAA-CAGTGTCATTGATCGATTACAATATACTAGAAGA 658
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
Sbjct 358 GACAAGAGAACTACAAAGCAGGGAATC-GTGTCGTTGATCGATTACAATATACTAGAAAA 416
Query 659 AGGAACTAGTGGTTTCAAGGAGAGTAACATTTTGGGTCAAGGTGGATTTGGATGTGTATA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGGAACTAGTGGTTTCAAGGAGAGTAACATTTTGGGTCAAGGTGGATTTGGATGTGTATA 476
Query 719 TTCT-GCCACATTAGAGAACAACATTTCAGCTGCGGTTAAGAAGCTAGACTGTGCCAATG 777
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 TT-TGGCCACATTAGAGAACAACATTTCAGCTGCGGTCAAGAAGCTAGACTGTGCCAATG 535
Query 778 AAGATGCAGCAAAGGAATTTAAGAGTGAGGTTGAGATATTGAGTAAGCTCCAGCACCCGA 837
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAGATGCGGCTAAGGAATTTAAGAGTGAGGTTGAGATATTGAGTAAGCTCCAGCACCCGA 595
Query 838 ATATAATATCCCTTTTGGGTTATAGCACGAATGATACTGCGA-GATTCATTGTCTATGAG 896
|||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||
Sbjct 596 ATATAATATCCCTTTTGGGTTATAGCACAAATGATACTGC-ACGATTCATCGTCTATGAG 654
Query 897 CTGATGCCAAACGTTTCTCTGGAATCTCATTTACACGGATCTTCTCAG-GGTTCGGCGAT 955
|||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||
Sbjct 655 CTGATGCCAAACGTTTCTCTGGAATCTCATTTGCACGGATCCTCTC-GAGGTTCGGCGAT 713
Query 956 CACATGGCCTATGAGGATGAAGATTGCTCTTGATGTAACAAGGGGATTAGAATATTTGCA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CACATGGCCTATGAGGATGAAGATTGCTCTTGATGTAACAAGGGGATTAGAATATTTGCA 773
Query 1016 TGAACATTGTCATCCAGCAATCATTCACAGGGACTTGAAATCATCCAACATCTTATTAGA 1075
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 774 TGAACATTGTCATCCAGCAATCATCCACAGGGACTTGAAATCATCCAACATCTTGTTGGA 833
Query 1076 TAGCAATTTCAATGCTAAGATTTCAGATTTTGGTCTAGCTGTTGTTGATGGGCCAAAGAA 1135
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 834 TAGTAATTTCAATGCTAAGATTTCAGATTTTGGTCTTGCTGTTGTTGATGGGCCGAAGAA 893
Query 1136 CAAGAACCATAAACTTTCCGGGACAGTTGGCTACGTTGCACCAGAGTATCTTCTCAACGG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAAGAACCATAAACTTTCCGGGACAGTTGGCTACGTTGCACCAGAGTATCTTCTCAACGG 953
Query 1196 CCAATTGACAGAAAAGAGCGACGTGTATGCTTTTGGAGTAGTGTTATTAGAGCTTTTACT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CCAATTGACAGAAAAGAGCGACGTGTATGCTTTTGGAGTAGTGTTATTAGAGCTTTTACT 1013
Query 1256 CGGGAAAAAACCTGTGGAGAAACTAGCTCCCGGTGAATGCCAATCCATCATCACTTGGGC 1315
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CGGGAAAAAACCCGTGGAGAAACTAGCTCCCGGTGAATGCCAATCCATCATCACTTGGGC 1073
Query 1316 AATGCCTTATCTCACTGATAGAACCAAGTTACCAAGCGTCATAGATCCTGCGATTAAAGA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AATGCCTTATCTCACTGATAGAACCAAGTTACCAAGCGTCATAGATCCTGCGATTAAAGA 1133
Query 1376 TACGATGGACTTGAAACACCTTTACCAGGTAGCGGCAGTGGCGATTTTGTGCGTGCAGCC 1435
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1134 CACAATGGACTTGAAACACCTTTACCAGGTAGCGGCAGTGGCGGTTTTGTGCGTGCAGCC 1193
Query 1436 AGAACCGAGTTATAGACCGTTGATTACAGACGTCTTGCATTCTCTTATACCTTTGGTTCC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGAACCGAGTTATAGACCGTTGATTACAGACGTCTTGCATTCTCTTATACCTTTGGTTCC 1253
Query 1496 AATGGAACTTGGTGGAACCTTAAAAACCATCAAATGTGCTTCAATGGATCACTGTTAA 1553
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1254 AATGGAACTTGGTGGAACCTTAAAAACAATCAAATGTGCTTCAATGGATCACTGTTAA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5