BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11060.1 Length=1810 Score E Sequences producing significant alignments: (Bits) Value Ahg487938 jgi|Araly1|487938|fgenesh2_kg.6__1072__AT5G11060.1 2145 0.0 Ahg489374 jgi|Araly1|489374|fgenesh2_kg.6__2508__AT5G25220.1 992 0.0 > Ahg487938 jgi|Araly1|487938|fgenesh2_kg.6__1072__AT5G11060.1 Length=1693 Score = 2145 bits (1161), Expect = 0.0 Identities = 1433/1554 (92%), Gaps = 60/1554 (4%) Strand=Plus/Plus Query 281 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACA 340 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 173 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCACTTCACCGACCAACAACAACA 232 Query 341 TCAG-C--CTCCTCCTCCG---CCG-CA-A-CAGCAGCAGCAACAACATTTTCAAGAATC 391 ||| | ||||||||||| ||| || | ||||| || |||||||||||||| ||||| Sbjct 233 CCAGCCTTCTCCTCCTCCGCCACCGTCACAGCAGCAACAACAACAACATTTTCATGAATC 292 Query 392 AGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGC 451 ||| || ||||||||||||||||||||||| ||||| || || || || || || | Sbjct 293 AGCTCCGCCTAATTGGCTCCTCCGCTCCGATAACAA-TT--TC---CT-CA-AC--CT-C 341 Query 452 CTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 511 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 CAC-ACCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 400 Query 512 ACGATCCTCATCCTTCCTCCAACGAGGC--AACACCGCAAACAACAACAACAACGAAACA 569 |||||||||||||||||||||||| ||| |||| || | |||||||||||||||||| Sbjct 401 ACGATCCTCATCCTTCCTCCAACGCGGCGGAACA--GC--A-AACAACAACAACGAAACA 455 Query 570 TCCGGTGACGTCATCGAAGACGTTC-CCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAA 628 |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| Sbjct 456 TCCGGTGACGTCATCGAAGACG-TCGCCGGCGGAGAGGAGTCAACGATCGGAGAGAAGAA 514 Query 629 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATA 688 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 515 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTCTA 574 Query 689 CGAGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 748 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 CGAGCAGCTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 634 Query 749 TCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTT 808 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 635 TCCGAGGATTGACGCACAGCTTGCTCAGTCGCAAAACGTCGTGGCTAAGTACTCAACCTT 694 Query 809 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 868 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 754 Query 869 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGC 928 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 755 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAATTGCAACAGCATGTTCGAGTTCATGC 814 Query 929 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGT 988 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 815 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAGCAGTCTCTTCAAAGTTTTACAGGAGT 874 Query 989 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 1048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 934 Query 1049 TGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCAC 1108 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 935 TGATGCTCCTTTGTTTGATGGAAGCTTAGATGGTTTAGGGTTTGGTCCTCTAGTTCCCAC 994 Query 1109 TGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCA 1168 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 995 TGAGAGTGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTTAAACATGAACTCAAGCA 1054 Query 1169 GGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1228 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1055 GGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1114 Query 1229 AAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTG 1288 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1115 AAAATTACCAGGAGATACCACCTCTGTTCTCAAAGCATGGTGGCAATCTCATTCTAAGTG 1174 Query 1289 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAA 1348 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1175 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTCAA 1234 Query 1349 ACAGATAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTC 1408 |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 1235 ACAGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCATAGCAATCCATCTTC 1294 Query 1409 TTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCG 1468 |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || Sbjct 1295 TTCTACCGTCTCAAAGAACAAACGCAGAAGCAATGCAGGTGAAAATAGCGGAAGAGAGCG 1354 Query 1469 TTGAGATCA-----A-GCTTGCATGTAGAGATCCAAAAGCTTTATAGAAAGGTGGAGGCA 1522 ||||| ||| | ||| ||||| |||||||||||||||| ||||||| ||||| || Sbjct 1355 TTGAGGTCACTTTGAAGCTCGCATGGAGAGATCCAAAAGCTTAATAGAAAATTGGAGACA 1414 Query 1523 T---GAAGACAAAGAATTCTTACACAACAAACGTAGGACGTAATTTT-GTGCCAGTACAT 1578 | |||||||| ||||||||||||||||||| ||| |||||||||| ||| || ||||| Sbjct 1415 TCATGAAGACAA-GAATTCTTACACAACAAACTTAGAACGTAATTTTTGTGTCATTACAT 1473 Query 1579 GGTATGGCTTTCATATTTGGTAATGATTAGGGCCACACAAAATTAAACCCCAAAGCATGA 1638 |||||| ||| |||| || ||||||||||||| ||||| | | |||||||| |||| Sbjct 1474 GGTATGACTTCCATAGTTCGTAATGATTAGGGA-ACACACCA--AG-CCCCAAAGTATGA 1529 Query 1639 TTTGTAATATGAGGTTTTAGATGGACT--TT-ATGATAGGATCGTCAGTCTTCACTGCCA 1695 ||||||||||||||||||||||||||| || |||||||||||||||||| || | | | Sbjct 1530 TTTGTAATATGAGGTTTTAGATGGACTACTTTATGATAGGATCGTCAGTCGTCG-T-C-A 1586 Query 1696 TCT-CCATTCTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAAATTTCTCG 1754 || |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1587 -CTGCCAT-CTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAGATTTCTCG 1644 Query 1755 TTAT-GCATTTAATTTGTGCAATCATTGGCCGTAATCTACACAAATATACATAT 1807 |||| |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1645 TTATAGCATTT-----GTGCAATCATTGGCCGTAATCTACACAAATATGCATAT 1693 Score = 285 bits (154), Expect = 8e-76 Identities = 171/178 (96%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 45 AAGAAGAATAAATATAGGAATAAATCGTCTTTTTTGGTGTAAGCTACATATAAAATTCAA 104 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 AAGAAGAATAAATATAGGAATAAATCGTC-TTTTTGGTGTAAGCTACATATAAAATTCAA 59 Query 105 ACCG-TCAAACACACATACACATCGAAACCCTTATATTTCATTTTCTTTCTGTTTTAGAG 163 | || || || |||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 60 A-CGTTC-AA-ACACATACACATCGAAACCCTTATATTTCATTTTCTTTCT-TTTTAAAG 115 Query 164 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 173 > Ahg489374 jgi|Araly1|489374|fgenesh2_kg.6__2508__AT5G25220.1 Length=1816 Score = 992 bits (537), Expect = 0.0 Identities = 735/832 (88%), Gaps = 8/832 (1%) Strand=Plus/Plus Query 638 GAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATACGAGCAACT 697 ||| ||||||||||||||||||||||||||||| || |||||||| || |||||||| || Sbjct 590 GAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTCTCTCATCCTCTTTACGAGCAGCT 649 Query 698 TTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGAT 757 ||||||||| ||||| || || |||| ||||| || ||||| |||||||||||||| || Sbjct 650 TTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAAT 709 Query 758 AGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTTA---GAAGC 814 || || |||||||||||||| ||| ||||||| ||||| |||||| ||||| | || Sbjct 710 CGATGCTCAGCTTGCTCAGTCACAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGC 769 Query 815 CGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGT 874 |||||||||| |||| ||| |||||||| ||||||||||| |||||||| |||||||| Sbjct 770 CGCTCAAGGA---CTCGTCGGTGATGACAAAGAGCTTGACCAGTTCATGACACATTATGT 826 Query 875 ACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCAATGGA 934 | || || || ||||||||||| ||| ||||||| || |||||||||||||||||||| Sbjct 827 GTTGTTACTGTGTTCTTTCAAAGAGCAATTGCAACAACACGTTCGTGTTCATGCAATGGA 886 Query 935 AGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGTATCTCC 994 |||||| ||||| |||||||||||||| ||||| |||||||| || ||||| || ||||| Sbjct 887 AGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGTGTGTCTCC 946 Query 995 TGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATGC 1054 ||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 947 TGGTGAAGGGATGGGAGCAACAATGTCTGATGATGAAGATGAACAAGTAGAGAGTGATGC 1006 Query 1055 TCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCACTGAGAG 1114 | ||||||| ||||| |||||||||| ||| |||||||||||| | ||||| |||||||| Sbjct 1007 TAATTTGTTCGATGGGAGCTTAGATGTGTTGGGGTTTGGTCCTTTGGTTCCTACTGAGAG 1066 Query 1115 CGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCAGGGTTA 1174 |||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| Sbjct 1067 TGAGAGATCGTTGATGGAAAGAGTTAGACAAGAACTCAAACATGAACTCAAACAGGGTTA 1126 Query 1175 CAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAAAATT 1234 ||||||||| || || |||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1127 CAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTGAGGAAGAGAAGAGCTGGGAAATT 1186 Query 1235 ACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTGGCCTTA 1294 |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1187 ACCAGGAGACACTACCTCTGTTCTTAAAGCATGGTGGCAATCTCATTCTAAGTGGCCTTA 1246 Query 1295 CCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAAA-CAGA 1353 ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||| Sbjct 1247 CCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCT-AAAGCAGA 1305 Query 1354 TAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTCTTCTA 1413 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 1306 TAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCA 1365 Query 1414 CCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGA 1465 | |||| ||||| |||||| ||||||||||||||| || ||||| ||||| Sbjct 1366 CTGTCTTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGGAGAGA 1417 Score = 95.3 bits (51), Expect = 1e-18 Identities = 114/142 (80%), Gaps = 14/142 (10%) Strand=Plus/Plus Query 421 ACAACAACTTCCTCAATCTCCACACAGCT-GC-CT--CTGC-C-GCCGCTA-CAAGCTCC 473 ||||||| ||||| || |||||||||||| | || | | | |||| | | |||||| Sbjct 313 ACAACAATTTCCTTAACCTCCACACAGCTACCGCTAACACCACAACCGCAAGC-AGCTCC 371 Query 474 GATTCTCCTTCTTCCGCCGCCGCT------AACCAGTGGCTCTCACGATCCTCATCCTTC 527 |||||||||||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct 372 GATTCTCCTTCTTCCGCCGCCGCTGCTGCTAACCAGTGGCTCTCTCGCTCCTCCTCCTTC 431 Query 528 CTCCAACGAGGCAACACCGCAA 549 ||||||||| ||||| ||||| Sbjct 432 CTCCAACGAAACAACAACGCAA 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67952997080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5