BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11090.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487941 jgi|Araly1|487941|fgenesh2_kg.6__1075__AT5G11090.1 1334 0.0
Ahg489379 jgi|Araly1|489379|fgenesh2_kg.6__2513__AT5G25280.2 339 4e-92
> Ahg487941 jgi|Araly1|487941|fgenesh2_kg.6__1075__AT5G11090.1
Length=1010
Score = 1334 bits (722), Expect = 0.0
Identities = 883/953 (93%), Gaps = 41/953 (4%)
Strand=Plus/Plus
Query 111 aaaaaaaTGGTGACTACATCGTCACGAACCAAGTCAAACGGACCGGTGCTTCGTTCACAA 170
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAATGGTGACTACTTCGTCACGAACCAAGTCAAACGGACCGGTGCTTCGTTCACAA 60
Query 171 TCACCGTCAGGTCGATTTTGCGGTGGTTACTCAAGAGCCGTTCCGTCATCTTCTTCATCA 230
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 61 TCACCGTCGGGTCGATTTTGCGGTGGTTACTCAAGAGCCGTTCCATCGTCTTCTTCATCA 120
Query 231 GCTTTCGCTTCATCAACGAGTTCTAGCTTTTCATCTCCGTCGTCAGCTTTTTTCAGCAAT 290
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 GCTTTCGCTTCATCAACGAGTTCTAGCTTTTCGTCTCCGTCATCAGCTTTTTTCAGCAAT 180
Query 291 CACCGTCATCACGAGAGCAATCACAGTCACCACCGATCTGCGTCACCGACTCGTGTGAAT 350
|||||||| ||||||| ||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 181 CACCGTCACCACGAGAACAACCAGAGTCATCACCGATCTGCGTCACCGACTCGTGTGAAT 240
Query 351 CTCTACACAGCGCAACCGATGTCTCAGTCGTTTCGTTACTCTCTCGATAGCAGATCTATA 410
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 241 CTCTACACAGCGCAACCGATGTCTCAGTCGTTTCGATATTCTCTCGATAGCAGATCTATA 300
Query 411 TCTCCGACTAACAAATCGATCTCCGTTTCGAAGAATCAGCCACCGAG---CCA-TA-A-T 464
|||||||||||||||||||||||||| |||||||||||||||||||| ||| | | |
Sbjct 301 TCTCCGACTAACAAATCGATCTCCGTATCGAAGAATCAGCCACCGAGCCACCACCACAGT 360
Query 465 CACAAGATCT------C---AAGGAGATGTATGTGTTCTCCGACGACGCATCCAGGATCT 515
|||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACAAGATCTCAGAAACGAGAAGGAGATGTATGTGTTCTCCGACGACGCATCCAGGATCT 420
Query 516 TTCAGATGCAGTCTACATAAGAACGTAGCGAATCCACATGGTCAAGGTACAGCTTCGTAT 575
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAGATGTAGTCTACACAAGAACGTAGCGAATCCACATGGTCAAGGTACAGCTTCGTAT 480
Query 576 ACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTAATTCGCTGGTGAGAATTGGT 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 ACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTAATTCGCTGGTGAGAATCGGT 540
Query 636 GGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACTACTTTGATTCGACCTTCTTCGCAT 695
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACGACTTTGATTCGACCTTCTTCGCAT 600
Query 696 CATCTGAAAAGACGAGCTGCTTATCAGCCACGTCCTAGTCGACTCTCAATCATGGCGAAA 755
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 601 CATTTGAAAAGACGAGCTGCTTATCAGCCTCGTCCTAGTCGGCTCTCAATCATGGCCAAA 660
Query 756 GCTGATGA-G--AATTGATTTTGATCTGGATTTT-GGTTAATTCAGGTTTGTTTTGTTTG 811
|||||||| | ||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 661 GCTGATGATGGGAATTGATTT-GATCTGGATTTTTGG--AATTCAGGTTTGTTTTGTTTG 717
Query 812 TTGTTCTTCT-CTCTTTAAACGAAAACCACCACAGGATTTAGTAGATCCGGCGAAGAAGT 870
|||||||||| ||||| ||| |||| ||||||||||||| |||||||||||||| |||||
Sbjct 718 TTGTTCTTCTTCTCTTAAAA-GAAA-CCACCACAGGATT-AGTAGATCCGGCGATGAAGT 774
Query 871 C-TTGTTATGAAGCT-GA-G-G-TCTGCGAAGAAGAATCATCCTCGAGAAATCGAGATTT 925
| ||||||||||||| | | | ||||||||||| || || |||| || |||||||||
Sbjct 775 CCTTGTTATGAAGCTAGGCGAGATCTGCGAAGAA---TCGTCGTCGA-AA-TCGAGATTT 829
Query 926 TGTAAAAGGAAGAAACACACACCTATCATAAttttt-ttGTTGTTGGGTGAAAGAAGATG 984
||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct 830 TGTAAAACGAAGAAACACACACC-ATCATAATTTTTGTTGTTGTTGGGTGAA-GAAGATG 887
Query 985 CTAGAATGCATTGTACATACGTTCTCTTTTTTACTGTTTTTGTTGCTCTCTCT 1037
|||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 888 CTAGAATGCATTGTACATAC-TTCTCTTTTT-ACTGTTTTTGTTGCTCTCTCT 938
Score = 86.1 bits (46), Expect = 5e-16
Identities = 67/76 (88%), Gaps = 5/76 (7%)
Strand=Plus/Plus
Query 1058 aaaaaaaaaaaaTGTTCGGAGTCTCACCAAAAATTAGAGACCTAAAATCGAAAATCAAAG 1117
||||||||||||||||||||||| ||||||| ||| | | ||||||||||||||||||
Sbjct 939 AAAAAAAAAAAATGTTCGGAGTCACACCAAA--TTACAT-C-TAAAATCGAAAATCAAAG 994
Query 1118 AACTGAATCTAA-TTT 1132
||||||||| || |||
Sbjct 995 AACTGAATCCAAATTT 1010
> Ahg489379 jgi|Araly1|489379|fgenesh2_kg.6__2513__AT5G25280.2
Length=1947
Score = 339 bits (183), Expect = 4e-92
Identities = 515/669 (77%), Gaps = 48/669 (7%)
Strand=Plus/Plus
Query 116 aaTGGTGACTACATCGTC-ACGAACCA--AG-TCAAACGGA-CCGGTGCTTCG-TTCACA 169
||||| || |||||| || | |||||| || ||||||||| | | | || || | || |
Sbjct 87 AATGGCGATTACATCTTCTA-GAACCACCAGATCAAACGGATCTGCT-CTCCGATCCA-A 143
Query 170 ATCACCGTCAGGTCGATTTTGCGGTGGT-TACTCAAGAGCCGTTCCGTCAT-CTTCTTCA 227
||||||||| || ||||| || || || |||||| | | | | || | | || ||
Sbjct 144 ATCACCGTCCGGCCGATTCTGTGG-CGTATACTCATCA-TC-AT-CATC-TCCGTCGTCG 198
Query 228 TCAGCTTTCGCTTCATCAACGAGTTCTAGCTTT-TCATCTCCGTCGT-CAGCTTTTTTCA 285
|||| ||||||||| || || || || || ||| || || ||||| | |||| |||||||
Sbjct 199 TCAGGTTTCGCTTCTTCCACAAGCTCAAG-TTTCTCGTCACCGTC-TACAGCGTTTTTCA 256
Query 286 GCAATCACCGTCATCACGAGAGCA--ATCACAGTCACC-AC-C-GATCTGCGTCACCGAC 340
||| ||| ||| || | | || | || | |||| || | ||||||| || |||||
Sbjct 257 GCAGCCACAATCAGAAC-A-ACCACCACCATAACCACCAACACAGATCTGCATCTCCGAC 314
Query 341 TCGTGTGAATCTCTACACAGC-GCAACCGATGTCTCAGTCGTTTCGTTACTCTCTCGATA 399
||||||||||| | |||| | || |||||| | || |||||||||||||| | ||||
Sbjct 315 GCGTGTGAATCTATTCACATCAGC-TCCGATGACGCAATCGTTTCGTTACTCGATTGATA 373
Query 400 GCAGATCTATATCTCCGACTAACAAATCGATCTCCGTTTCGAAGAATCAGCCACCGAGCC 459
|||||||||||| |||| | | ||| ||| | ||||| || || ||| ||
Sbjct 374 ACAGATCTATATCACCGA--ATC-GATCCATCGCTGTTTCTTCCAA-CA--AACCTAGTA 427
Query 460 ATAATCACAAGA-T-C----TC---AAGGAGATGTATGTGTTCTCCGACGACGCATCCAG 510
|| |||| |||| | | || ||||||||||||||||||||||||||||||||| |
Sbjct 428 ATCATCATAAGATTCCGGATTCGAGAAGGAGATGTATGTGTTCTCCGACGACGCATCCTG 487
Query 511 GATCTTTCAGATGCAGTCTACATAAGAACGTAGCGAATCCACATGGTCAAGGTACAGCTT 570
| |||||| | || |||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 488 GTTCTTTCCGGTGTAGTCTACACAAGAACGTCGCGAATCCACACGGTCAAGGTACAGGGA 547
Query 571 CGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTAATTCGCTGGTGAGAA 630
||||| | |||||| | |||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 548 CGTATCCGACGAATAGTTTGAATATGCGTAGATCTGCGATGACGAATTCGCTTGTGAGAA 607
Query 631 TTGGTGGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACTACTTTGATTCGACCTTCTT 690
| |||||||||||||| || ||||||||||||||||||||||||||||||||||| || |
Sbjct 608 TCGGTGGTGTTGAAGGTGAATGGGTGAGAAGAGCTTTGACTACTTTGATTCGACCATCGT 667
Query 691 CGCATCATCTGAAAAGACGAGCTGCTTATCAGCCACGTCCTAGTC-GACTCTCAATC-AT 748
| ||||| || || ||| || |||| ||| | || |||| ||| | ||||| || || ||
Sbjct 668 CACATCAACTCAAGAGAAGATCTGCGTATGAACCTCGTCGTAG-CAGACTCGCA-TCTAT 725
Query 749 GGCGAAAGC 757
| |||||||
Sbjct 726 GTCGAAAGC 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5