BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11110.1
Length=3576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487943 jgi|Araly1|487943|fgenesh2_kg.6__1077__AT5G11110.1 5262 0.0
Ahg488935 jgi|Araly1|488935|fgenesh2_kg.6__2069__AT5G20280.1 859 0.0
> Ahg487943 jgi|Araly1|487943|fgenesh2_kg.6__1077__AT5G11110.1
Length=3365
Score = 5262 bits (2849), Expect = 0.0
Identities = 3225/3402 (95%), Gaps = 44/3402 (1%)
Strand=Plus/Plus
Query 3 TCGCCAAATCACCTCTTTCCCTCTCCTTCTTCTTCGTCTCTCTCGTTCGTTTTCTAGAAA 62
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TCGCCAAATCACCTCTTTCCCTCTCCTTCTTCTTCG--TCTCTCGTTCGTTTTCTAGAAA 58
Query 63 CCTGTCATC-CTCTTCCATCTCCAGA--TCACAACACTAACTATCATCACT-TTTGTATA 118
||| |||| ||||||| |||||| | || ||| | || ||||||| | ||| ||||
Sbjct 59 -CTGACATCTCTCTTCCTTCTCCAAATTTCGTAAC-C-CACCATCATCAATATTT-TATA 114
Query 119 TCCGATTCCTGATTCACCAGTTTTTGTAGAGAGATTGGTTTCTGCTTTCTCCAGATCGTT 178
||||| | | | | |||||||| |||||||||| |||||| ||||||| |||||||
Sbjct 115 TCCGA-T-C-----C-CGAGTTTTTGCAGAGAGATTGCTTTCTGGTTTCTCCGGATCGTT 166
Query 179 GAGTTCGGGAGAGCGAACACCAATGGTGGGAAACGACTGGGTGAATAGTTACCTGGAGGC 238
||||| || ||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 167 GAGTT-TGG-GAGCGAACAATAATGGTGGGAAACGACTGGGTTAATAGTTACCTGGAGGC 224
Query 239 GATTCTCGCAGCCGAACCTGGAATCGCCAATTCCAAACCGCCTGGAACCGGCGATTCCAA 298
||||||||| |||||||||||||||| |||||| ||| ||||||||| |||| |||||||
Sbjct 225 GATTCTCGCTGCCGAACCTGGAATCGGCAATTCTAAATCGCCTGGAAACGGCAATTCCAA 284
Query 299 ATCGTCTCTTCTGCTGAGAGAGCGTGGCCATTTCAGTCCCACTCGTTATTTCGTTGAAGA 358
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 285 ATCGTCTCTTCTGCTGAGAGAGCGTGGCCATTTCAGTCCTACTCGTTATTTCGTCGAAGA 344
Query 359 GGTTATCACAGGCTTTGATGAGACTGATCTTCACCGTTCCTGGGTTCAGGCTGCTGCAAC 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 345 GGTTATCACAGGCTTCGATGAGACTGATCTTCACCGTTCCTGGGTTCAGGCTGCTGCGAC 404
Query 419 CAGGAGTCCGCAAGAGCGTAACACAAGGTTGGAGAATTTGTGCTGGAGGATCTGGAATTT 478
|| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 405 GAGAAGTCCGCAAGAGCGGAACACGAGGTTGGAGAATTTGTGTTGGAGGATCTGGAATTT 464
Query 479 GGCTCGCCAGAAGAAGCAGGTTGAAGGGAAGAATGCTAAGCGTGAAGCTAAAAGGGAGCG 538
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 465 GGCTCGTCAGAAGAAGCAGGTTGAAGGGAAGAATGCTAAGCGTGAAGCTAAAAGGCAGCG 524
Query 539 TGAGCGTGAGAAAGCAAGGAGGGAAGTAACTGCTGAAATGTCTGAAGATTTCTCTGAAGG 598
||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 525 TGAACGTGAAAAAGCAAGGAGGGAAGTAACTGCTGAGATGTCAGAAGATTTCTCTGAAGG 584
Query 599 AGAGAAGGCAGATTTGCCTGGTGAAATCCCAACTCCTAGTGATAACAACACCAAAGGAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AGAGAAGGCAGATTTGCCTGGTGAAATCCCAACTCCTAGTGATAACAACACCAAAGGAAG 644
Query 659 AATGTCTCGGATTAGTTCTGTTGATGTCTTTGAGAATTGGTTTGCTCAACACAAAGAGAA 718
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 645 GATGTCTCGGATTAGTTCTGTTGACGTGTTTGAGAATTGGTTTGCTCAACACAAAGAGAA 704
Query 719 AAAGCTTTACATCGTGTTAATAAGTCTTCATGGTTTGATACGTGGTGAAAACATGGAGCT 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AAAGCTTTACATTGTGTTAATAAGTCTTCATGGTTTGATACGTGGTGAAAACATGGAGCT 764
Query 779 TGGTCGCGATTCTGATACTGGTGGCCAGGTGAAGTATGTTGTGGAACTTGCAAGGGCATT 838
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGGTCGGGATTCTGATACTGGTGGCCAGGTGAAGTATGTTGTGGAACTTGCAAGGGCATT 824
Query 839 AGGCTCAATGCCAGGAGTCTATCGTGTTGATTTGTTGACCAGACAGGTCA-CCGCGCCAG 897
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 825 AGGCTCAATGCCAGGAGTCTATCGTGTCGATTTGTTGACCAGACAGGT-ATCCGCGCCAG 883
Query 898 ATGTGGATTCCAGCTACTCTGAACCGTCTGAGATGTTAAATCCTATAGACACAGATATAG 957
|||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||
Sbjct 884 ATGTGGATTCCAGCTACTCTGAGCCGTCTGAGATGTTACATCCTTTAGACACAGATACAG 943
Query 958 AGCAGGAGAATGGAGAGAGTAGTGGCGCTTATATAATCCGTATTCCTTTTGGCCCGAAAG 1017
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 944 AGCAGGAGCATGGAGAGAGTAGTGGCGCTTATATAATCCGTATTCCTTTTGGTCCGAAAG 1003
Query 1018 ATAAATATGTACCAAAAGAGCTCCTCTGGCCTCATATCCCTGAATTTGTTGATAGGGCAC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 ATAAATATGTACCAAAAGAGCTCCTCTGGCCTCATATCCCTGAATTTGTTGATAGGGCAC 1063
Query 1078 TTAGCCATATTATGCAGATTTCAAAGGTTCTTGGTGAGCAAATTGGTGGTGGACAACAAG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TTAGCCATATTATGCAGATTTCAAAGGTTCTTGGTGAGCAAATTGGTGGTGGACAACAAG 1123
Query 1138 TATGGCCAGTTTCTATTCACGGGCATTATGCAGATGCTGGTGATTCCACTGCTCTTTTAT 1197
| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1124 TGTGGCCAGTTTCTATTCACGGGCACTATGCAGATGCTGGTGATTCCGCTGCTCTTTTAT 1183
Query 1198 CTGGGGCTCTGAATGTACCAATGGTTTTTACTGGGCATTCTCTTGGTCGTGATAAGCTTG 1257
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CTGGAGCCCTGAATGTACCAATGGTTTTTACTGGGCATTCTCTTGGTCGTGATAAGCTTG 1243
Query 1258 AGCAACTCCTGAAACAAGGACGGCCAAAAGAAGAAATCAATTCCAACTACAAGATA-TGG 1316
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 1244 AGCAACTCCTGAAACAAGGGCGGCCAAAAGAAGAAATAAATTCCAACTACAAGATAATG- 1302
Query 1317 AGACGGATAGAGGCAGAGGAGTTATGTCTTGATGCTTCTGAGATTGTCATAACTAGTACA 1376
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1303 AGACGGATAGAGGCAGAGGAGCTATGTCTTGATGCTTCTGAGATTATCATAACTAGTACA 1362
Query 1377 AGGCAAGAGGTAGACGAGCAATGGCGCCTTTATGATGGTTTTGATCCGGTTTTGGAGCGA 1436
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 AGGCAAGAGATAGAAGAGCAATGGCGCCTTTATGATGGTTTTGATCCGGTTTTGGAGCGT 1422
Query 1437 AAACTCAGAGCAAGAATGAAAAGGGGTGTGAGTTGTCTAGGCAGATTTATGCCTCGCATG 1496
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1423 AAACTCAGAGCAAGAATGAAAAGGGGTGTGAGCTGTCTAGGCAGATTTATGCCTCGCATG 1482
Query 1497 GTTGTTATTCCTCCAGGAATGGAATTTCATCACATTGTACCACATGATGTGGATGCAGAT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GTTGTTATTCCTCCAGGAATGGAATTTCATCACATTGTACCACATGATGTGGATGCAGAT 1542
Query 1557 GGAGATGATGAAAATCCACAAACTGCTGATCCACCAATTTGGTCTGAGATTATGCGCTTC 1616
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GGAGATGATGAAAATCCACAATCTGCTGATCCACCAATTTGGTCTGAGATTATGCGCTTC 1602
Query 1617 TTCTCTAACCCGCGCAAGCCTATGATTCTCGCTCTTGCTCGGCCAGACCCTAAAAAGAAC 1676
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1603 TTCTCTAACCCGCGCAAGCCTATGATTCTTGCTCTTGCTCGGCCAGACCCTAAAAAGAAC 1662
Query 1677 TTGGTTACTCTAGTCAAAGCCTTTGGAGAATGCCGTCCATTACGGGAGCTTGCGAACCTT 1736
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1663 TTGGTTACTCTAGTCAAAGCCTTTGGAGAATGCCGTCCATTACGTGAGCTTGCGAATCTT 1722
Query 1737 ACATTGATAATGGGAAATCGAAATGATATTGATGAGTTGTCCTCCACGAATTCCTCTGTG 1796
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1723 ACATTGATAATGGGAAATCGAAATGATATCGATGAGTTGTCCTCCACGAACTCCTCTGTG 1782
Query 1797 CTGCTCTCAATTCTGAAGCTAATAGACAAGTACGACTTATACGGTCAAGTGGCAATGCCT 1856
|||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1783 CTGCTCTCAATTTTGAAGCTAATCGACAAGTACGACTTATATGGTCAAGTGGCAATGCCT 1842
Query 1857 AAGCATCACCAACAATCTGATGTGCCTGAAATTTACCGTTTGGCAGCCAAAACAAAGGGA 1916
||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 1843 AAGCATCACCAACAATCTGATGTACCAGAAATTTATCGTTTAGCAGCCAAAACAAAGGGA 1902
Query 1917 GTATTTATAAATCCAGCGTTCATCGAACCATTTGGACTGACTCTAATCGAGGCAGGAGCT 1976
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1903 GTATTTATAAATCCAGCTTTCATCGAACCATTTGGACTGACTTTAATCGAGGCAGGAGCT 1962
Query 1977 CATGGGCTCCCCACTGTTGCAACAATTAATGGAGGACCTGTCGATATACATCGGGTTCTT 2036
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1963 CATGGGCTCCCCACTGTCGCAACAATAAATGGAGGACCTGTCGATATTCATCGGGTTCTT 2022
Query 2037 GACAATGGTCTTCTAGTTGATCCTCATGATCAGCAAGCTATAGCTGATGCGCTCCTGAAA 2096
||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2023 GACAATGGTCTTCTAATTGACCCTCATGATCAGCAAGCTATAGCTGATGCTCTCCTGAAA 2082
Query 2097 CTAGTTTCTGACAGACAGCTATGGGGAAGATGCAGACAAAATGGCCTAAATAACATTCAC 2156
||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2083 CTAGTTTCTGACAAACAGCTATGGGGAAGATGCAGACAAAACGGCCTAAAAAACATTCAC 2142
Query 2157 CTGTTTTCATGGCCAGAGCACTGCAAAACATATTTGGCTCGGATAGCTTCGTGCAAGCAA 2216
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2143 CTGTTTTCATGGCCAGAGCATTGCAAAACATATTTGGCTCGGATAGCTTCGTGCAAGCAA 2202
Query 2217 AGACATCCTAAATGGCAGAGAGTTGAGTTTGAGAACTCAGACTCCGATTCACCCAGCGAC 2276
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2203 AGACATCCTAAATGGCAGATAGTTGAGTTTGAGAACTCAGACCCCGATTCACCCAGCGAC 2262
Query 2277 TCTCTTAGAGATATAAATGACATCTCCTTGAATCTAAAACTTTCCTTAGATGGCGAAAAG 2336
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 2263 TCTCTTAGAGATATACATGACATCTCCTTGAACCTAAAACTTTCCTTAGATGGCGAAAGG 2322
Query 2337 AGTGGAAGTAACAATGGTGTAGATACTAACTTAGATGCTGAAGACAGAGCTGCTGAACGT 2396
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2323 GGTGGAAGTAACAATGGTGTAGATACTAACTTAGATGCTGAAGACAGCGCTGCTGAACGT 2382
Query 2397 AAAGCTGAGGTAGAGAAAGCTGTTTCAACCTTGGCACAAAAGAGCAAACCAACAGAGAAA 2456
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2383 AAAGCTGAGGTAGAGAAAGCTGTTTCAACCTTGGCACAAAAGAGCAAACCAGCAGAGAAA 2442
Query 2457 TTTGATTCCAAGATGCCTACTTTGAAAAGACGGAAAAATATATTTGTCATTTCTGTGGAC 2516
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2443 TTTGATTCCAAGATGCCGACTTTGAAAAGACGGAAACATATATTTGTCATTTCTGTGGAC 2502
Query 2517 TGTAGCGCAACCTCAGATCTTCTTGCAGTGGTGAAAACAGTTATTGATGCTGCAGGAAGA 2576
|| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2503 TGCGGCGCAACCTCAGATCTTCTCGCAGTGGTGAAAACAGTTATCGATGCTGCAGGAAGA 2562
Query 2577 GGCAGTTCAACAGGATTCATTCTCTCAACCTCAATGACAATATCTGAGACTCACACAGCA 2636
||| |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 2563 GGCGGTTCAACAGGATTCATACTCTCAACTTCAATGACTATATCTGAGACTCACACAGCA 2622
Query 2637 CTGCTTTCAGGAGGGTTGAAACCACAAGATTTTGATGCTGTTATTTGCAGCAGTGGAAGT 2696
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2623 TTGCTTTCAGGAGGGTTGAAACCACAAGACTTTGATGCTGTTATTTGCAGCAGTGGAAGT 2682
Query 2697 GAACTCTACTTCACGTCCT-CTGGTTCAGAGGATAAGACCGCACTTCCTTATACACTCGA 2755
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2683 GAACTCTACTTCACGTC-TGCTGGTTCTGAGGATAAGACCGCACTTCCTTATACACTCGA 2741
Query 2756 TGCAGATTACCATTCCCATATAGAATTCCGCTGGGGTGGAGAGAGCTTGAGGAAGACTTT 2815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2742 TGCAGATTACCATTCCCATATAGAATTCCGCTGGGGTGGAGAGAGCTTGAGGAAGACTTT 2801
Query 2816 GATCCGTTGGATTAGTTCTGTTGAAGAGAAGAAAAAGACGAAAAAAGGAGAGATTTTAGT 2875
|||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 2802 GATCCGCTGGATTAGTTCTGTTCAAGAGAAGAAAAAGGCGAAACAAGGAGAGATTTTAGT 2861
Query 2876 TGAAGACGAGTCTTCTTCTACCAACTATTGCCTATCCTTCAAAGTGAAAGATCCCGCTTT 2935
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||
Sbjct 2862 TGAAGACGAGTCTTCTTCTACCAGCTATTGCTTATCCTTCAAAGTGAAAGATCCCACTTT 2921
Query 2936 GATGCCTCCAATGAAAGAGCTGAGGAAATTGATGAGAAATCAAGCATTACGTTGCAATGC 2995
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2922 GATTCCTCCAATGAAAGAGCTGAGGAAATTGATGAGAATTCAAGCATTACGTTGCAATGT 2981
Query 2996 AGTTTACTGCCAAAATGGAGCTAGGCTTAATGTAATCCCTGTTCTTGCATCACGATCTCA 3055
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2982 AGTTTACTGCCAAAATGGAGCTAGGCTTAATGTAATTCCTGTTCTTGCCTCACGATCTCA 3041
Query 3056 GGCCCTTAGGTATTTGCTAGTGCGATGGGGCATTGACTTATCGAACATGGTGGTGTTCGT 3115
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3042 GGCCCTTAGGTATTTGCTAGTGCGATGGAGCATTGACTTATCGAACATGGTGGTGTTCGT 3101
Query 3116 GGGAGATTCAGGTGACACGGATTACGAAGGCTTGCTTGGAGGAATTCACAAAACAGTGAT 3175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3102 GGGAGATTCAGGTGACACGGATTACGAAGGCTTGCTTGGAGGAATTCACAAAACAGTGAT 3161
Query 3176 ACTTAAAGGCTTAGCCAGTGACTTGCGTGAGCAACCCGGCAACAGAAGCTACCCAATGGA 3235
||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 3162 ACTTAGAGGCTTAGCCAGTGACTTGCGCGAGTTACCCGGCAACAGAAGCTACCCAATGGA 3221
Query 3236 GGATGTGACTCCACTGAACAGTCCCAACATCACCGAGGCTAAAGAATGTGGTCGTGACGC 3295
||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 3222 GGATGTGACTCCACTTAACAGTCCCAATATCACCGAAGCTACAGAATGTGGTCGTGACGC 3281
Query 3296 CATTAAGGTCGCTCTAGAGAAGCTTGGGATCAGTCTCCTCAAGCCTTGAGGACTGAGGCT 3355
|||||||| |||| |||| ||||||||||||| | ||||||||| ||| |
Sbjct 3282 CATTAAGGCCGCTTTAGAAAAGCTTGGGATCA--------A-GCCTTGAGG-CTG----T 3327
Query 3356 GttttttttttCTCAATAAAAGAAGTTTTTGTTGGACCAATA 3397
||||||| |||||||||||||||||||||||||||||||
Sbjct 3328 -TTTTTTT---CTCAATAAAAGAAGTTTTTGTTGGACCAATA 3365
> Ahg488935 jgi|Araly1|488935|fgenesh2_kg.6__2069__AT5G20280.1
Length=3541
Score = 859 bits (465), Expect = 0.0
Identities = 1551/2061 (75%), Gaps = 131/2061 (6%)
Strand=Plus/Plus
Query 342 CGTTA-TTTCGTTGAAGAGGTTATCACAGGCTT-TGATGAGACTGATCTTCACCGTTCCT 399
||||| ||| ||||| || || ||||| || || ||||||||||||||||| | ||||
Sbjct 275 CGTTACTTT-GTTGAGGAAGTCATCACTGG-TTACGATGAGACTGATCTTCATAGATCCT 332
Query 400 GGGTTCAGGCTGCTGCAACCAGGAGTCCGCAAGAGCGTAACACAAGGTTGGAGAATTTGT 459
||||| |||||| ||| || |||||||| || ||| | ||||| || || |||||| |||
Sbjct 333 GGGTTAAGGCTGTTGCTACGAGGAGTCCACAGGAGAGGAACACGAGATTAGAGAATATGT 392
Query 460 GCTGGAGGATCTGGAATTTGGCTCGCCAGAAGAAGCAGGTTGAAG-GGAAGAATGCTA-A 517
| ||||||||||||||| | ||||| || ||||||||| ||||| ||||| || | |
Sbjct 393 GTTGGAGGATCTGGAATCTCGCTCGTCAAAAGAAGCAGCATGAAGAAAAAGAA-GC-ACA 450
Query 518 G-CG-TGAAGCTAAAAG-GGAGCGTGAGCGTGAGAAAGCAAGGAGGGAAGTAACTGCTGA 574
| | || ||||| | | || ||| |||||||||| | || || | ||| |||||
Sbjct 451 GAGGCTG--GCTAAGCGCCG-GCTTGAACGTGAGAAAGGTCGCAGTGAGGCAACAGCTGA 507
Query 575 AATGTCTGAAGA-TTTCTCTGAAGGAGAG-AAGGCAGAT-TTGCCTGGTGAAATCCCAAC 631
|||||||| || ||| ||||| |||||| |||| |||| || | |||| ||| ||||
Sbjct 508 TATGTCTGAGGAGTTT-TCTGAGGGAGAGAAAGG-AGATATTATC-AGTGATATCTCAAC 564
Query 632 TCCTAGTGATAACAACACCAAAGGAAGAATGTCTC-GGATTAGTTCTGTTGATGT-CTTT 689
|| | ||| || | ||||||| ||| || | | | |||| ||||| ||| | | |
Sbjct 565 TCATGGTG--AA-AGCACCAAACCAAGGTTG-CCCAGAATTAATTCTGCTGA-CTCCATG 619
Query 690 GAG-AATTGGTTTGCTCAACACAAAGAGAAA-AAGCTTTA-CATCGTGTTAATAAGTCTT 746
||| || || || ||||| ||| |||| ||||| || | | || || || ||||||
Sbjct 620 GAGTTATGGGCAAGC-CAACA-GAAGGGAAATAAGCTCTATC-TTGTTTTGATTAGTCTT 676
Query 747 CATGGTTTGATACGTGGTGAAAACATGGAGCTTGGTCGCGATTCTGATACTGGTGGCCAG 806
|||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 677 CATGGTCTCATACGTGGTGAAAACATGGAGCTTGGTCGCGATTCTGATACCGGTGGCCAG 736
Query 807 GTGAAGTATGTTGTGGAACTTGCAAGGGCATTAGGCTCAATGCCAGGAGTCTATCGTGTT 866
|| ||||||||||||||||||||| | ||||| || |||||||||||||| ||| | |||
Sbjct 737 GTTAAGTATGTTGTGGAACTTGCACGTGCATTGGGTTCAATGCCAGGAGTTTATAGGGTT 796
Query 867 GATTTG-TTGACCAGACA-G-GTCACCGCGCCAGATGTGGATTCCAGCTACT--CTGAAC 921
|| ||| || || ||||| | ||| | | |||||||| || | || || | | ||||
Sbjct 797 GACTTGCTT-ACTAGACAAGTGTCTTC-C-CCAGATGTTGACTATAGTTA-TGGC-GAAC 851
Query 922 CGTCTGAGATGTTAAATCCTATAGACAC--A-GATATAGAGCAGGAGAATGGAG-AGAGT 977
|| | || ||| | | ||||| ||| | | ||| | | | |||| ||| | |||||
Sbjct 852 CGACAGAAATGCTGACTCCTAGAGATTCTGAAGATTTCTCGGACGAGA-TGGGGGAGAGT 910
Query 978 AGTGGCGCTTATATAATCCGTATTCCTTTTGGCCCGAAAG-ATAAATATGTACCAAAAGA 1036
|| || |||||||| | | || || ||||| || |||| | || ||| | ||||||||
Sbjct 911 AGCGGTGCTTATATTGTGAGGATACCATTTGGTCC-AAAGGACAAGTATATTCCAAAAGA 969
Query 1037 GCTCCTCTGGCCTCATATCCCTGAATTTGTTGATAGG-GC-ACTTAGCCATATTATGCAG 1094
|| || |||||||| || ||||||| |||||| || || | | | ||| || |||||
Sbjct 970 ACTTCTATGGCCTCACATTGCTGAATTCGTTGAT-GGTGCTA-TGAACCACATCATGCAA 1027
Query 1095 ATTTCAAAGGTTCTTGGTGAGCAAATTGGTGGTGGACAA-CA-AGTATGGCCAGTTTCTA 1152
|| ||||| ||||||||||||||| |||||| ||| || | | | ||||| | | | |
Sbjct 1028 ATGTCAAATGTTCTTGGTGAGCAAGTTGGTGTTGGG-AAGCCTATT-TGGCCTGCTGCCA 1085
Query 1153 TTCACGGGCATTATGCAGATGCTGGTGATTCCACTGCTCTTT-TATCTGGGGCTCTGAAT 1211
| || || || ||||| |||||||||||| |||||||| || | ||||| || || |||
Sbjct 1086 TCCATGGACACTATGCTGATGCTGGTGATGCCACTGCT-TTACTGTCTGGTGCACTAAAT 1144
Query 1212 GTACCAATGGTTTTTACTGGGCATTCTCTTGGTCGTGATAAGCTT-GAGCAACTCCTGAA 1270
|| || ||| | ||||||| || || |||||||| ||||| || ||||| || |||
Sbjct 1145 GTGCCTATGCTCCTTACTGGCCACTCACTTGGTCGAGATAAA-TTAGAGCAGCTTTTGAG 1203
Query 1271 ACAAGGACGGC---CAAAAGAAGAAATCAATTCCAACT-ACAAGAT-ATGGAGACGGATA 1325
|||||| || | ||||||||||||| ||||| |||| ||||||| ||| | || |||
Sbjct 1204 ACAAGGCCGCCTTTCAAAAGAAGAAATAAATTC-AACTTACAAGATTATGC-GTCGAATA 1261
Query 1326 GAGGCAGAGGAGTTATGTCTTGATGCTTCTGAGATTGTCATAACTAGTACAAGGCAAGAG 1385
|||| ||||| |||| |||||||| |||||| || || |||||||| || | || |||
Sbjct 1262 GAGGGTGAGGAATTATCTCTTGATGTTTCTGAAATGGTAATAACTAGCACTCGACAGGAG 1321
Query 1386 GTAGACGAGCAATGGCGCCTT-TATGATGGTTTTGATCCGGTTTTGGAGCGAAAACT-CA 1443
| || ||||||||| | || |||||||||||||| || | |||||||| ||| | |
Sbjct 1322 ATCGATGAGCAATGGAGA-TTGTATGATGGTTTTGACCCCATATTGGAGCGCAAATTGC- 1379
Query 1444 GAGCAAGAATGAAAAGGGGTGTGAGTTGTCTA-GG-CAGATTTATGCCTCGCATGGTTGT 1501
|||| ||||| || || |||||| || ||| || | | || |||||||||||||||
Sbjct 1380 GAGCCAGAATCAAGCGGAATGTGAGCTG-CTATGGGCGG-TTCATGCCTCGCATGGTTAA 1437
Query 1502 TATTCCTCCAGGAATGGAATTTCA-TCACATTGTACCACATGATG-TGG-ATGCA-GATG 1557
||||| || || ||||| || || ||| ||||| ||||||| || || ||| | ||
Sbjct 1438 AATTCCACCTGGGATGGAGTT-CAATCATATTGTCCCACATGGTGGTGATATGGAAGACA 1496
Query 1558 GAGATG--AT-GA--AA-ATCCA-CAAACTGCTGATCCACCAATTTGGTCTGAGATTATG 1610
||||| | || || ||||| | || | ||||||||||| ||| ||||||| |||
Sbjct 1497 CAGATGGGAACGAGGAACATCCAACTT-CTCCAGATCCACCAATATGGGCTGAGATAATG 1555
Query 1611 CGCTTCTTCTCTAACCCGCGCAAGCCTATGATTCTCGCTCTTGCTCGGCCAGACCCTAAA 1670
|| ||||| || || | || ||||||||||| || || ||||| |||| ||||| |||
Sbjct 1556 CGTTTCTTTTCGAATTCTCGAAAGCCTATGATACTTGCCCTTGCGAGGCCCGACCCAAAA 1615
Query 1671 AAGAACTTGGTTAC-TCTAGTCAAAGCCTTTGGAGAATGCCGTCCATT-ACGGGAGCTTG 1728
|||||| | || | |||| || || ||||||||||| |||||| | | | |||||||
Sbjct 1616 AAGAACATCACGACGT-TAGTGAAGGCATTTGGAGAATGTCGTCCACTGA-GAGAGCTTG 1673
Query 1729 CGAACCTTACA-TTGATAATGGGAAATC-GAAATGATATTGATGAGTTGTCCTCCACGAA 1786
| ||||| || || || ||||| || | || ||| |||||||| |||| |||||
Sbjct 1674 CTAACCTGGCACTT-ATTATGGGTAA-CAGAGATGGGATTGATGAAATGTCGAGCACGAG 1731
Query 1787 TTCCTCTGTGCTGCTCTCAATTCTGAAGCTAATAGACAAGTACGA-CTTATACGGTCAAG 1845
||| ||||| || || || |||| |||||||| |||||||| || || ||||||||||
Sbjct 1732 TTCTTCTGTCCTTCTATCTGTTCTAAAGCTAATTGACAAGTATGATCTC-TACGGTCAAG 1790
Query 1846 TGGCAATGCC-TAAGCATCACCAACAATCTGATGTGCCTGAAATTTACCGT-TTGGCAGC 1903
| || | || ||| |||||| |||| || ||||| || || || || || ||| | ||
Sbjct 1791 TTGCG-TACCCTAAACATCACAAACAGTCAGATGTTCCAGACATATATCGCCTTG-CTGC 1848
Query 1904 CAAAA-CAAAGGGAGTATTT-ATAAATCCAGCGT-TCATCGAACCATTTGGACTGAC-TC 1959
||| ||||||| || ||| || |||||||| | |||| |||||||||||||| || |
Sbjct 1849 -AAAGTCAAAGGGTGT-TTTCATCAATCCAGC-TATCATTGAACCATTTGGACTTACAT- 1904
Query 1960 TAATCGAGGCAGGAGCTCATGGGCTCCCCACTG-TTGCAACAATTAATGGAGGACCTGTC 2018
|||| ||||| | |||||||| | || | || |||| |||| ||||| || |||||
Sbjct 1905 TAATTGAGGCTGCTGCTCATGGTTTACCTA-TGGTTGCTACAAAAAATGGTGGTCCTGTA 1963
Query 2019 GATATACATCGGGTTCTTGACAATGGTCTTCTAGTTGATCCTCATGATCAGCAAGCTATA 2078
|||||||| ||||| || |||||||||||||| || |||||||||||||||||| ||||
Sbjct 1964 GATATACACCGGGTCCTGGACAATGGTCTTCTTGTGGATCCTCATGATCAGCAATCTATT 2023
Query 2079 GCTGATGCGCTCCTGAAACTAGTTTCTGACA-GACAGCTATGGGGAA-GATG-CAGACAA 2135
|||| || || || || || ||| |||| | | || ||||||| || | || | | |||
Sbjct 2024 TCTGAAGCTCTTCTTAAGCTTGTTGCTGATAAG-CACCTATGGGCAAAG-TGTCGG-CAA 2080
Query 2136 AATGGCCTAAATAACATTCACCTGTTTTCATGGCCAGAGCACTGCAAAACATATTTGGCT 2195
|| || | || |||||||||| ||||| |||||||||||||||||||| ||| | ||
Sbjct 2081 AACGGGTTGAAGAACATTCACCAATTTTCTTGGCCAGAGCACTGCAAAACTTATCTATCT 2140
Query 2196 CGGATAGCTT-CGTGCAAGCAAAGACATCCTAAATGGCAGAGAGTTGA-GTT--TGAGAA 2251
|| ||| | | | ||| | ||||||||| | ||||| || | ||| | ||| ||
Sbjct 2141 CGCATAACCAGCTT-CAAACCAAGACATCCGCAGTGGCAAAGTGATGATGGCGGTGATAA 2199
Query 2252 CTCAGA-CTCCGATTCACCCAGCGACTCTCTT-AGAGATATAAATGACATCTCCTTGAAT 2309
||||| | |||| ||||| || || ||| || ||||||||| | || || ||||||||
Sbjct 2200 TTCAGAAC-CCGAGTCACCTAGTGATTCT-TTGAGAGATATACAGGATATATCCTTGAA- 2256
Query 2310 CTAAAACTTTCC-TTAGATGG 2329
|| ||| ||| | || |||||
Sbjct 2257 CTTAAAGTTTTCATTTGATGG 2277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135066326577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5