BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11160.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487948 jgi|Araly1|487948|fgenesh2_kg.6__1082__AT5G11160.1 1280 0.0
> Ahg487948 jgi|Araly1|487948|fgenesh2_kg.6__1082__AT5G11160.1
Length=1037
Score = 1280 bits (693), Expect = 0.0
Identities = 956/1073 (89%), Gaps = 58/1073 (5%)
Strand=Plus/Plus
Query 1 CAACTGGTGGTGAacagaggaacagagcgagacagagacatagagagagagagagaagag 60
||||||||||||||||||||||||||||||||||||||| | | | |||| |||
Sbjct 1 CAACTGGTGGTGAACAGAGGAACAGAGCGAGACAGAGAC------ACACA-AGAG-AGA- 51
Query 61 agaagaTCTGATCTCATTTCA-TT--TCATTTCCTTCTTCTGCGAGGGAAATTTATTTGT 117
| || |||||||||||||||| || || |||||||||||||||||||||||||| ||||
Sbjct 52 A-AATATCTGATCTCATTTCATTTCCTCGTTTCCTTCTTCTGCGAGGGAAATTTAATTGT 110
Query 118 TTCCTACTTTGAATTCTTCCCCATTTACTCTCTCAagagagagagagagtgcgagagaTT 177
|| |||||||||| | | || || | ||||||||||| ||||||||
Sbjct 111 TTTCTACTTTGAA---------A--T-CT-TC-C--CAGAGAGAGAGA----GAGAGATT 150
Query 178 AATACACACAAGTGAAGACGCTCCTTAACTCTCTCAGAATTG--------AAACTTT--A 227
||| ||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 151 GATATACACAAGTGAAGACGCTCCTTGACTCTCTCAGAATTGAAATTTCAAAACTTTAGA 210
Query 228 GTg--aga-aagaga-agagagagaga-aaa-gaTGTTTGCGGCGGAGAATGGTCTCAAA 281
| | ||| |||||| ||||||||||| ||| |||||| ||||||||||||||||| |||
Sbjct 211 GAGAAAGAGAAGAGAGAGAGAGAGAGAGAAACGATGTTCGCGGCGGAGAATGGTCTTAAA 270
Query 282 GGAGATCCAAGGCTTGAAGCTATATCAGCAGCCATTAGGGTTGTCCCTAATTTCCCTAAG 341
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 271 GGAGATCCAAGGCTTGAAGCTATATCAGCAGCCATTAGAGTTGTTCCTAATTTCCCCAAG 330
Query 342 AAAGGGATTATGTTTCAGGACATAACTACGTTGTTACTGGATCACAAGGCGTTTAAACAC 401
|||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct 331 AAAGGGATTATGTTTCAGGACATAACAACGTTGTTATTGGATCGCAAGGCGTTTAAACAT 390
Query 402 ACAATTGATATCTTCGTAGATCGTTACAAAGACATGCAAATCTCTGTCGTTGCTGGAGTT 461
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ACAATTGACATCTTCGTAGATCGTTACAAAGACATGCAAATCTCTGTCGTTGCTGGAGTT 450
Query 462 GAAGCAAGAGGTTTCTTGTTTGGTCCTTCCATTGCATTAGCCATCGGCGCAAAGTTTATC 521
||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||| ||
Sbjct 451 GAAGCAAGAGGCTTCTTGTTCGGTCCCTCCATTGCATTAGCTATCGGCGCAAAGTTTGTC 510
Query 522 CCTTTGCGTAAACCAGGAAAATTACCAGGGAAAGTGATATCGGAGTCTTATGAGCTCGAG 581
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 511 CCTTTGCGTAAACCAGGGAAATTACCAGGGAAAGTGATATCAGAGTCTTATGAGCTCGAG 570
Query 582 TATGGGCATGACCGTTTAGAGATGCATGTTGGCGCTGTTGAGCCACGCGAACGCGTCATT 641
||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 571 TATGGACATGACCGTTTAGAGATGCATGTGGGTGCCGTTGAGCCACGCGAACGCGTCATT 630
Query 642 ATCATTGATGATCTTGTTGCTACTGGCGGCACTCTTTCTGCCGCAATGAGCCTATTGGAG 701
||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 631 ATCATCGATGATCTTGTTGCTACGGGCGGCACTCTTTCAGCCGCCATGAGCCTATTGGAA 690
Query 702 AGCCAAGGAGCTGAAGTTGTTGAGTGTGCTTGTGTTATTGGCTTGCCTGAAGTCAAGGGG 761
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 691 AGCCAAGGAGCTGAAGTTGTTGAGTGTGCTTGTGTTATTGGCCTGCCTGAAGTCAAGGGG 750
Query 762 CAACACAAGCTCAAAGGGAAGCCGCTTTATGTGTTGGTGGAGCCTAGTGGATTAGATGAG 821
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 751 CAACACAAGCTGAAAGGGAAGCCGCTTTATGTGCTGGTGGAGCCTAGTGGATTAGATGAG 810
Query 822 TTCTGTTAGGATACATACCGGTTACTTCCGGTTCAGTTTTCTTTCCC-TGCAGAGTTCAT 880
|||||||||| |||||| |||||| ||||||||||||||| |||||| | ||||||||||
Sbjct 811 TTCTGTTAGGGTACATATCGGTTAATTCCGGTTCAGTTTT-TTTCCCCTTCAGAGTTCAT 869
Query 881 GTTCtttttttCAAAATTTCTAGGGTTCCAACTTCTTGTATTCGTTCTCGTTT-ATTGAT 939
|||| | || |||| |||||| |||||||||||||||||||||||||| ||| | | |
Sbjct 870 GTTCCTATTC-CAAA-TTTCTAAGGTTCCAACTTCTTGTATTCGTTCTCATTTTAC-GTT 926
Query 940 CTCTGTAGATTTTGAATTTTGATGTGTACTTTCCACGGCAGTGGTTGGTAAAAAACCGAG 999
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 927 CTCTGTAGATTTTGAATTTTGATGTCTACTTTCCACGGCAGTGGTTGGTAAAAA-CCGGG 985
Query 1000 ATACTGAAAAGAGTCTTTACATTTCCCGG-TTTGGTGGAATTTCTGATGGATC 1051
||| | |||| |||||||||| |||| || |||||| || |||||||||||||
Sbjct 986 ATATTCAAAATAGTCTTTACAATTCC-GGATTTGGTAGATTTTCTGATGGATC 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5