BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11190.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893032 jgi|Araly1|893032|Al_scaffold_0006_1028 865 0.0
> Ahg893032 jgi|Araly1|893032|Al_scaffold_0006_1028
Length=564
Score = 865 bits (468), Expect = 0.0
Identities = 538/571 (94%), Gaps = 8/571 (1%)
Strand=Plus/Plus
Query 1 ATGGTACATTCGAGGAAGTTCCGAGGTGTCCGCCAGCGACAATGGGGTTCTTGGGTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTACATTCGAGGAAGTTCCGAGGTGTCCGCCAGCGACAATGGGGTTCTTGGGTCTCT 60
Query 61 GAGATTCGCCATCCTCTATTGAAGAGAAGAGTGTGGCTTGGAAC-TTTCGAAACGGCAGA 119
|||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 61 GAGATTCGTCATCCTCTATTGAAGAGAAGAGTGTGGCTTGGCACATTT-GAAACGGCAGA 119
Query 120 AGCGGCTGCAAGAGCATACGACCAAGCGGCTCTTCTAATGAACGGCCAAAACGCTAAGAC 179
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 AGCGGCTGCAAGAGCTTACGACCAAGCGGCTCTTCTAATGAACGGTCAAAACGCTAAGAC 179
Query 180 CAATTTCCCTGTCGTAAAATCAGAGGAAGGCTCCGATCACGTTAAAGATGTTAACTCTCC 239
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CAATTTCCCTGTCGTGAAATCAGAGGAAGGCTCCGATCACGTTAAAGACGTTAACTCTCC 239
Query 240 GTTGATGTCACCAAAGTCATTATCTGAGCTTTTGAACGCTAAGCTAAGGAAGAGCTGCAA 299
||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||
Sbjct 240 GTTAATGTCACCAAAGTCGTTATCTGAGCTCTTGAACGCTAAGTTAAGGAAGAGCTGCAA 299
Query 300 AGACCTAACGCCTTCTTTGACGTGTCTCCGTCTTGATACTGACAGTTCCCACATTGGAGT 359
|||||||||||| || |||||||||| ||||||||||| || |||||||||||||||||
Sbjct 300 AGACCTAACGCCGTCGCTGACGTGTCTTCGTCTTGATACCGATAGTTCCCACATTGGAGT 359
Query 360 TTGGCAGAAACGGGCCGGGTCGAAAACAAGTCCGACTTGGGTCATGCGCCTCGAACTTGG 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 TTGGCAGAAACGGGCCGGGTCGAAAACAAGTCCGACTTGGGTCATGCGTCTCGAACTTGG 419
Query 420 GAACGTAGTCAACGAAAGTGCGGTTGACTTAGGGTTGACTACGATGAACAAACAAAACGT 479
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GAACGTAGTCAACGAAAATGCGGTTGACTTAGGGTTGACTACGATGAAGAAACAAAACGT 479
Query 480 TGagaaagaagaagaagaagaagaagCTATTATTAGTGATGAGGATCAGTTAGCTATGGA 539
||||||||||||||| |||||| |||||| ||||||||||||| ||||| |||||
Sbjct 480 CGAGAAAGAAGAAGAACAAGAAG---CTATTA---GTGATGAGGATCAATTAGCCATGGA 533
Query 540 GATGATCGAGGAGTTGCTGAATTGGAGTTGA 570
|||||||||||| |||||||| |||||||||
Sbjct 534 GATGATCGAGGAATTGCTGAACTGGAGTTGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5