BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11260.1
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940600 jgi|Araly1|940600|scaffold_601144.1 885 0.0
> Ahg940600 jgi|Araly1|940600|scaffold_601144.1
Length=544
Score = 885 bits (479), Expect = 0.0
Identities = 513/529 (97%), Gaps = 3/529 (1%)
Strand=Plus/Plus
Query 184 GTAAGAAAAATGCAGGAACAAGCGACTAGCTCTTTAGCTGCAAGCTCTTTACCATCAAGC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 GTAAGAAAAATGCAGGAACAAGCGACTAGCTCTTTAGCTGCAAGCTCTTTACCATCAAGC 71
Query 244 AGCGAGAGGTCATCAAGCTCTGCTCCACATTTGGAGATCAAAGAAGGAATTGAAAGCGAT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 AGCGAGAGGTCATCAAGCTCTGCTCCACATTTGGAGATCAAAGAAGGAATTGAAAGCGAT 131
Query 304 GAGGAGATACGGCGAGTGCCGGAGTTTGGAGGAGAAGCTGTCGGAAAAGAAACTTCCGGT 363
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 132 GAGGAGATACGGCGAGTGCCGGAGTTCGGAGGAGAAGCTGCCGGAAAAGAAACTTCCGGT 191
Query 364 AGAGAATCTGGATCGGCGACCGGTCAGGAGCGGACACAGGCGACTGTCGGAGAAAGTCAA 423
|||||||||||||||||||| ||||| |||||||||||| || ||||||| |||||||||
Sbjct 192 AGAGAATCTGGATCGGCGACTGGTCAAGAGCGGACACAGACGGCTGTCGGCGAAAGTCAA 251
Query 424 AGGAAGCGAGGGAGGACACCGGCGGAGAAAGAGAACAAGCGGCTGAAGAGGTTGTTGAGG 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AGAAAGCGAGGGAGGACACCGGCGGAGAAAGAGAACAAGCGGCTGAAGAGGTTGTTGAGG 311
Query 484 AACAGAGTTTCAGCTCAGCAAGCAAGAGAGAGGAAAAAGGCTTACTTGAGCGAGTTGGAA 543
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 312 AACAGAGTTTCAGCGCAGCAAGCAAGAGAGAGGAAAAAGGCTTACTTGAGTGAGTTGGAA 371
Query 544 AACAGAGTGAAAGACTTGGAGAACAAAAACTCTGAACTTGAAGAGCGACTCTCTACTCTT 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AACAGAGTGAAAGACTTGGAGAACAAAAACTCTGAACTTGAAGAGCGACTCTCTACTCTC 431
Query 604 CAGAACGAGAACCAGATGCTTAGACATATTCTGAAGAACACAACAGGAAACAAGAGAGGA 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CAGAACGAGAACCAGATGCTTAGACATATTCTGAAGAACACAACAGGAAACAAGAGAGGA 491
Query 664 GGTGGTGGTGGTTCTAATGCTGATGCAAGCCTTTGATCTCCTTCTTCTT 712
|||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 492 AGTGGTGGT--T-CTAACGCTGATGCAAGCCTTTGATCTCCTTCTTCTT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33433798209
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5