BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11280.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487960 jgi|Araly1|487960|fgenesh2_kg.6__1094__AT5G11280.1 1391 0.0
> Ahg487960 jgi|Araly1|487960|fgenesh2_kg.6__1094__AT5G11280.1
Length=865
Score = 1391 bits (753), Expect = 0.0
Identities = 828/865 (96%), Gaps = 2/865 (0%)
Strand=Plus/Plus
Query 6 CTGGTAACAACGGGTCCACTCT-GC-AtctctctctctctctctAGATTTGATTTCTTTG 63
|||||||||||||||||||||| | ||||| |||||||||||||||| |||||| |||
Sbjct 1 CTGGTAACAACGGGTCCACTCTCTCTTTCTCTGTCTCTCTCTCTAGATTCGATTTCGTTG 60
Query 64 CGGGCTTGTTAATGGCGAACCCAGGGCAATCAAAGGGATGGATAAAGAAATGGACGTCTA 123
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 61 CGGGCTTGTTAATGGCGAATCCAGGGCAATCAAAGGGATGGATTAAGAAATGGACGTCCA 120
Query 124 TGGCTTCATCGGTTTACTTCGTCTTGATCTTATTCCAGATCCCTCTCTTCAGAGTTCCAT 183
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 121 TGGCTTCATCGGTTTACTTCGTCTTGATCATATTCCAGATCCCTCTCTTCAGGGTTCCAT 180
Query 184 GTAGATCTGGTATGTGTTCATCGCCAATCCATGTGACATCGTCTCAGTTGATTTCTAGTG 243
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 181 GTAGATCTGGTATGTGTTCATCTCCGATCCATGTGACATCGTCTCAGTTGATTTCTAGTG 240
Query 244 AGATCTTTCCTGTTCCGATGATTAAGGCTCTCTTATACCCTGGTGCTGTAGTCAATGGCC 303
||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 241 AGATCTTTCCTGTTCCGGTGATTAAGGCTCTCCTATTCCCTGGTGCTGTAGTCAATGGTC 300
Query 304 TTGCCATCAACATGACATTTCCAAAGTGGGAAAATGTGTTAGATATCTACAATCTCACCA 363
|||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGCCACCAACCTGACCTTTCCAAAGTGGGAAAATGTGTTAGATATCTACAATCTCACCA 360
Query 364 ATGTGAAAGAAGCTTCTGCAGTGACCGATCTTCAACGCCTAGAGGTTCTTGCAGGGAGCT 423
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 ATGTGAAAGAAGCATCTGCAGTGACCGATCTTCAGCGCCTAGAGGTTCTTGCAGGGAGCT 420
Query 424 ACTTTTCTGTAGCTGGGGCGTTTGTGGGTTTGCTAAAGCCTGGAAGGATGAGCATGTTTG 483
|||||||||||||||||||||| || |||||||| ||||| || ||||||||||||||||
Sbjct 421 ACTTTTCTGTAGCTGGGGCGTTGGTTGGTTTGCTTAAGCCCGGTAGGATGAGCATGTTTG 480
Query 484 GGTCATTGCTACTAGTATGGGGTCTTGTTAAAGAAGGGATCTTAGGGAAGCCAGTAAATA 543
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTCATTGCTACTAGTTTGGGGGCTTGTTAAAGAAGGGATCTTAGGGAAGCCAGTAAATA 540
Query 544 CTGACCCAGCCAAAACTGTTTATGTGTACCCAACTATGGTGCTTGCGATGATCTGCGCTT 603
|||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||
Sbjct 541 CTGACCCAGCCAAAACCGTTTATGTGTACCCGACCATGGTGCTTGCAATGATCTGCGCTT 600
Query 604 TCTCTATGATAAAGTATGACTTGAGGAAAGCCACGAGGGCAGCTCCAGCTCGTCCCATTG 663
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCTATGATAAAGTATGACTTGAAGAAAGCCACGAGGGCAGCTCCAGCTCGTCCCATTG 660
Query 664 CTAAACCTCTAATGAGCTCTTCAAAATCTAAGCTGAAGTGAGTTTTTTGAGACTTAATAG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTAAACCTCTAATGAGCTCTTCAAAATCTAAGCTGAAGTGAGTTTTTTGAGACTTAATAG 720
Query 724 GGCTTGTGTCCTGTCTTTGTACCAACACCCGGGAAAGGAAAATGTCCCGGAAAATGGCAT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGCTTGTGTCCTGTCTTTGTACCAACACCCGGGAAAGGAAAATGTCCCGGAAAATGGCAT 780
Query 784 TGTCACTATATTTTGCTCTCAGTTACCTTATGTTTCATGAATTGTCTATTTTCTAGGACA 843
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTCACTGTATTTTACTCTCAGTTACCTTATGTTTCATGAATTGTCTATTTTCTAGGACA 840
Query 844 CTGCTCAGTAGTCAATATCTTCCAA 868
|||||||||||||||||||||||||
Sbjct 841 CTGCTCAGTAGTCAATATCTTCCAA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5