BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11420.1 Length=1513 Score E Sequences producing significant alignments: (Bits) Value Ahg487977 jgi|Araly1|487977|fgenesh2_kg.6__1111__AT5G11420.1 2128 0.0 > Ahg487977 jgi|Araly1|487977|fgenesh2_kg.6__1111__AT5G11420.1 Length=1444 Score = 2128 bits (1152), Expect = 0.0 Identities = 1353/1446 (94%), Gaps = 30/1446 (2%) Strand=Plus/Plus Query 31 TGCTGGCTCCTCTCCCAATTTCCCATAATTTACTAAATATCACT-T-TCTAGTCTCTTCT 88 |||||||||||||||||||||||||||||||| |||| | | || | ||||||||||||| Sbjct 1 TGCTGGCTCCTCTCCCAATTTCCCATAATTTAGTAAA-A-C-CTGTCTCTAGTCTCTTCT 57 Query 89 CTTTACTTTGGTCGTCCACAATGAAAGGAGGCAGCCTCTCGTTTCTCTTCGTTCTCCTAA 148 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 58 CTTTACTTTGGTCGTTCACAATGAAAGGAGGCAGCCTCTCGTTTCTCCTCGTTCTCCTAA 117 Query 149 TCGCCACCATCACTTCCGTCATTTGCTTCAGTGACGGGATGTTACCAAACGGCGACTTTG 208 |||||||||||||||||||| | |||||||| |||||||||||||| ||||| ||||||| Sbjct 118 TCGCCACCATCACTTCCGTCCTCTGCTTCAGCGACGGGATGTTACCGAACGGTGACTTTG 177 Query 209 AACTAGGACCAAAACCATCGGACATGAAAGGAACGCAAGTAATAAACAAGAAGGCGATTC 268 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 178 AGCTAGGACCAAAACCATCGGACATGAAAGGAACGCAAGTAATAAACAAGAACGCGATTC 237 Query 269 CTAGCTGGGAGCTTTCAGGCTTCGTCGAATACATAAAGTCCGGTCAAAAACAAGGAGACA 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CTAGCTGGGAGCTTTCAGGCTTCGTCGAATACATAAAGTCCGGTCAAAAACAAGGAGACA 297 Query 329 TGCTTCTCGTAGTCCCGGCCGGAAAGTTCGCAATCCGGCTAGGCAACGAGGCATCGATCA 388 |||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 298 TGCTTCTCGTCGTACCGGCAGGAAAATTCGCAATCCGGCTAGGCAACGAGGCATCGATCA 357 Query 389 AACAAAGACTTAACGTTACAAAAGGAATGTATTACTCACTGACGTTCAGTGCCGCAAGGA 448 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 358 AACAAAGACTTAACGTTACAAAAGGAATGTATTATTCACTCACGTTCAGTGCCGCAAGGA 417 Query 449 CATGTGCCCAAGACGAACGGCTCAACATATCGGTGGCACCTGACTCAGGCGTTATTCCTA 508 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 418 CATGTGCCCAAGACGAACGGCTCAACATATCGGTGGCACCTGACTCGGGTGTTATTCCTA 477 Query 509 TACAGACGGTGTACAGTAGCAGTGGATGGGACCTTTACGCATGGGCGTTCCAAGCCGAGA 568 |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||| ||| Sbjct 478 TACAGACGGTGTACAGTAGCAGTGGATGGGACCTCTACGCTTGGGCGTTTCAGGCCAAGA 537 Query 569 GTAACGTGGCAGAGATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGAC 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GTAACGTGGCAGAGATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGAC 597 Query 629 CACTCATTGATGGTGTGGCAATCAAAGCTCTATACCCTCCTCGGCCCACCAATAAGAATA 688 |||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct 598 CACTTATTGATGGTGTCGCAATCAAAGCTCTCTACCCTCCTCGACCCACCAATAAGAATA 657 Query 689 TATTGAAGAACGGAGGATTTGAAGAAGGTCCCTACGTACTCCCAAACGCAACAACCGGCG 748 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 658 TATTGAAAAACGGAGGATTTGAAGAAGGTCCCTATGTACTCCCAAACGCAACAACCGGCG 717 Query 749 TTCTGGTTCCTCCCTTTATAGAAGATGACCACTCTCCTTTACCCGCGTGGATGGTCGAAT 808 ||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| Sbjct 718 TTCTGGTTCCTCCCTTTATAGAAGATGACCACTCTCCTTTACCTGCTTGGATGATCGAAT 777 Query 809 CACTCAAAGCCATCAAATACGTTGATGTCGAGCATTTCTCGGTCCCACAAGGCCGTCGAG 868 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 778 CACTCAAAGCCATCAAATACGTTGATGTCGAACATTTCTCGGTCCCACAAGGCCGTCGAG 837 Query 869 CCGTGGAGCTAGTGGCAGGCAAAGAAAGCGCAATCGCTCAGGTAGCTAGGACCGTTGTGG 928 |||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 838 CCGTGGAGCTGGTCGCAGGCAAAGAAAGCGCAATCGCTCAGGTGGCTCGGACCGTTGTGG 897 Query 929 GAAAAACTTACGTGCTTTCGTTTGCGGTTGGAGATGCTAACAATGCTTGCCAAGGATCGA 988 |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 898 GAAAGACTTACGTGCTCTCGTTTGCGGTTGGAGATGCTAACAACGCTTGCCAAGGATCGA 957 Query 989 TGGTGGTCGAGGCATTTGCGGGAAAAGACACTCTAAAGGTACCTTATGAGTCTCGAGGCA 1048 || | || |||||||||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct 958 TGATAGTTGAGGCATTTGCGGGAAAAGACACTTTAAAGGTACCTTATGAGTCGCGAGGGA 1017 Query 1049 AAGGAGGGTTCAAACGCGCTTCTCTACGGTTTGTGGCGGTTTCGACCCGCACAAGAGTTA 1108 ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 1018 AAGGAGGATTCAAACGCGCATCTCTGCGGTTTGTGGCGGTTTCGACCCGCACAAGGGTTA 1077 Query 1109 TGTTTTACAGCACATTTTACTCGATGAGAAGCGATGATTTCTCATCACTGTGTGGGCCCG 1168 ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1078 TGTTTTACAGCACGTTTTACTCGATGAGAAGCGATGATTTCTCGTCGCTGTGTGGGCCCG 1137 Query 1169 TGATCGATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGGCCATTGTTTTATTT 1228 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1138 TGATCGATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGACCATTGTTTTATTT 1197 Query 1229 CT-AAGGTTCTTCGTATAAGCCAGTGTGGTTTTTTATATAAATATGATTTTCTTAATCTC 1287 | || ||| |||||||||||||||||| |||| ||||||||||||||| Sbjct 1198 -TGAAAGTTGTTCGTATAAGCCAGTGTG-------ATAT------GATTTTCTTAATCTC 1243 Query 1288 TAATGCTTTTGAAATGAGATGAGTAATACTGAAAGGGTGTTTGTGGTGTAGGGTTTTATA 1347 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1244 TAATGCTTTTGAAATGAGATGAGTAATACTGAAAGGGTGTT-GTGGTGTAGGGTTTTATA 1302 Query 1348 TAAGGCAAAAAGGTCTTGCTTATATATATTTTCTTGTATGAGAAGGCTAAAGAAATGTTG 1407 ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1303 TAAGGCAGAAAGGTCTTGCTTATATCTATTTTCTTGTATGAGAAGGCTGAAGAAATGTTG 1362 Query 1408 TCTGTTTTTACTA-A-AT-T-GGGTTCTT-T-C-AAGGAGA-TCGGGTGATTGTGAGAAT 1459 ||| ||||||||| | || | |||||||| | | || |||| | |||||||| |||||| Sbjct 1363 TCTTTTTTTACTATATATATTGGGTTCTTCTTCTAAAGAGACT-GGGTGATTACGAGAAT 1421 Query 1460 AAAAAT 1465 |||||| Sbjct 1422 AAAAAT 1427 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56640194315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5