BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11450.1 Length=1140 Score E Sequences producing significant alignments: (Bits) Value Ahg487981 jgi|Araly1|487981|fgenesh2_kg.6__1115__AT5G11450.1 1637 0.0 > Ahg487981 jgi|Araly1|487981|fgenesh2_kg.6__1115__AT5G11450.1 Length=1068 Score = 1637 bits (886), Expect = 0.0 Identities = 1013/1074 (94%), Gaps = 9/1074 (1%) Strand=Plus/Plus Query 34 GAACACGCCATAGCTATGGCTCTTCTCTGTCCTTCTCTTCCCTCTCCGAATTCTCGTCTT 93 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 GAACACGCCATAGCTATGGCTCTTCTCTGTCCTTCTCTTCCCTCTCCCAATTCTCGTCTT 60 Query 94 TTCAGGTGCAGGAGCAGCAATATTTCGAGCAAGTATCATGGAGCCTCAAAGGAGCTGATG 153 |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| || Sbjct 61 TTCAGGTGCAGGAGCAGCAACATTTCGAGTAAGTATCATGGAGAATCAAAGGAGCTGTTG 120 Query 154 ATTGCTCGTTCTGGTGTGTCTACGAGATCAATTTCTTCGGAAAAGGGGCTTTCTCGTAGG 213 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 ATTGCTCGTTCTGGTGTGTCTACGAGATCAATTTCTTCGGAAAAGGGGCTCTCTCGTAGG 180 Query 214 GATTTAGTGCTCATTGGTCTCTCTTCTCCGTTGTCTATGTTCTTGCCATTGTCTTCTCCA 273 ||||| ||||| ||||||||||||||||| ||||||||| |||||||| |||| ||||| Sbjct 181 GATTTGGTGCTAATTGGTCTCTCTTCTCCTTTGTCTATGCTCTTGCCACTGTCGTCTCCT 240 Query 274 GTCACTCATGCAGAAGAAGACGTGAAAATGAGTGGAGAAGAATTGAAAATGGGTACAATG 333 ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 241 GTCACTCATGCAGAAGAAGACCTGAAAATGGGTACAGAAGAATTGAAAATGGGTACAATG 300 Query 334 GTGGATGATATTAATGCTTATTCTTATGCTTACCCATTGGATTATCCATCTGAGAAGCTT 393 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGGATGATATTAATGCTTACTCTTATGCTTACCCATTGGATTATCCATCTGAGAAGCTT 360 Query 394 GTCTTCAAATGGGTTGAATCAAGAAAGCCTGAAAGATACTCTTCAGCTGCACCACTCTCT 453 |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 361 GTCTTCAAATGGGTCGAATCAAGAAAGCCCGAACGATACTCTTCAGCTGCACCACTCTCT 420 Query 454 CCTGATGCACGTTTACGGATTGTTTCTGAACGAGTTGACCT-AACTGACAACCTCGTCAT 512 ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 421 CCTGATGCACGTTTACGGATTGTTTCTGAACGAGTTGACCTCATC-GACAACCTCGTCAT 479 Query 513 TTCTATTTCGATAGGTCCCCCAAACTCAAGATTAACATCAAAAGAAAAGAAAACATGGTC 572 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 480 TTCTGTTTCGATAGGTCCCCCAAACTCGAGATTAACATCAAAAGAAAAGAAAACATGGGC 539 Query 573 CGCTAAAGAAGTTGCTGATTCTGTTTTGTCTGATAAATCAGCATTGCGTGTCACCTCAAG 632 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CGCTAAAGAAGTTGCTGACTCTGTTTTGTCTGATAAATCAGCATTGCGTGTCACCTCAAG 599 Query 633 TCAGCGTCTTGAAGAGAGTTCGGTTCTTGATGCTCATGCTAGTGATATTGATGGGGAGCC 692 ||||||||| |||||||| |||||||| ||||| ||||||| |||||||||||||||||| Sbjct 600 TCAGCGTCTCGAAGAGAGCTCGGTTCTCGATGCACATGCTACTGATATTGATGGGGAGCC 659 Query 693 TTACTGGTACTACGAGTACCTTGTCCGCAAATCACCAACCAAAATTGCTGAAGCATCAAA 752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTACTGGTACTACGAGTACCTTGTCCGCAAATCACCAACCAAAATTGCTGAAGCATCAAA 719 Query 753 GCTTTACAGACACTATATTTCTTCAACAGCTGAACGTGATGGATACTTATACACCATAAA 812 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 720 GCTTTACAGACACTATATTTCTTCAACAGCTGAACGTGATGGGTACTTATACACCATAAA 779 Query 813 TGCTTCAACCCTTGGCAAGCAGTGGGACAAGATGGGACCGGTGTTAGAAAGAGCAGTAGG 872 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 780 CGCTTCAACTCTTGGCAAGCAATGGGACAAGATGGGACCGGTGTTAGAAAGAGCAGTAGG 839 Query 873 ATCCTTTAGGCTTCTTCCTCCTACTGATAGTTATGTTCCTCCATACAAGGATCCATGGAG 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ATCCTTTAGGCTTCTTCCTCCTACTGATAGTTATGTTCCTCCATACAAGGATCCATGGAG 899 Query 933 GTTTTGGTGATGCTTCCATCTGCCTCATG-AAATTTCTTTTTTC-GAAATTGTCGTTAAT 990 ||||||||||||||| ||||| ||||| | |||| |||||||| |||||||| |||||| Sbjct 900 GTTTTGGTGATGCTTTCATCTACCTCA-GCAAATA-CTTTTTTCCGAAATTGTTGTTAAT 957 Query 991 TTTGATAGGAGAGGAGGTTATGAAAGTTGTAGTGTGAGAAATGAGCCAAGCGAAGTGATT 1050 |||||||||||||| |||||||| ||||||||||||||||||| ||||||||| | | Sbjct 958 TTTGATAGGAGAGG---TTATGAAAAATGTAGTGTGAGAAATGAGCGAAGCGAAGTAAGT 1014 Query 1051 TTTCCAAATCCGAATATCTTGTTCACTATCAGATGTATTGAGATTGAGATATAA 1104 | |||||||| ||| ||||||||||| | || |||||||||||| ||||||||| Sbjct 1015 TGTCCAAATCTGAAAATCTTGTTCACAACCAAATGTATTGAGATGGAGATATAA 1068 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42507052455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5