BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11500.1 Length=1222 Score E Sequences producing significant alignments: (Bits) Value Ahg940626 jgi|Araly1|940626|scaffold_601170.1 1498 0.0 > Ahg940626 jgi|Araly1|940626|scaffold_601170.1 Length=870 Score = 1498 bits (811), Expect = 0.0 Identities = 851/870 (98%), Gaps = 3/870 (0%) Strand=Plus/Plus Query 106 GAGAGAGGGGGAAACCCTAGATTCGATCTCCATTCGATTTGATTCGTTTCTCGAATCGAA 165 |||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 1 GAGAGA-GGGGAAACCCTAGATTCGATCTCCATTCGATTTGGTTCGTTTGTCGAATCGAA 59 Query 166 GCGATGGTTTTCTACTTCAAGGCCCGTCCTGATGCTGGCGACTACACCATCTTCATGGGG 225 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 60 GCGATGGTGTTCTACTTCAAGGCCCGACCGGATGCTGGCGACTACACCATCTTCATGGGG 119 Query 226 CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT 179 Query 286 CACGTGGATAAAATGTCGTCAGCTCATGTTTACTTGAGGCTTCATAGAGGCCAAAGTTTT 345 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 180 CACGTGGATAAAATGTCGTCAGCTCATGTTTACCTGAGGCTTCACAGAGGCCAAAGTTTT 239 Query 346 GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT 299 Query 406 CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA 359 Query 466 ACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC 525 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ACTGCTTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC 419 Query 526 AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGACTGAACAAAACAAAAGTTGAAAGA 585 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGATTGAACAAAACAAAAGTTGAAAGA 479 Query 586 ACCCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCCGCAGAAAGGGCAGAGAGGAAA 645 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 480 ACTCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCTGCAGAAAGGGCAGAGAGGAAA 539 Query 646 CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA 599 Query 706 TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC 765 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC 659 Query 766 ATTGCTTCAAGCAACAAATCGCTTCAAGAACTTGAAGACGATTTCATGTAAAAGCTCTGA 825 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 660 ATTGCTTCAAGCAACAAATCGCTTCAAGAACTGGAAGACGATTTCATGTAAAAGCTCTGA 719 Query 826 AGAAATGAGAAACAAAACAAACCAAGTCGGTAACATTCTGCCAGAGATGATCTGGTACCG 885 |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 720 AGAAATGAGAAA-AAA-CAAACCAAGTCGGTAACATTCTGCCAGAGGTGATCTGGTACCG 777 Query 886 TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAACTATGATGTTGATGGTTGTCCG 945 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 778 TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAATTATGATGTTGATGGTTGTCCG 837 Query 946 GTTCTATGTTTTCTTTaaaaaaaTCTTGAA 975 ||| |||||||||||| ||||||||||||| Sbjct 838 GTTTTATGTTTTCTTTCAAAAAATCTTGAA 867 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45633131649 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5