BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11500.1

Length=1222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940626 jgi|Araly1|940626|scaffold_601170.1                       1498    0.0  


> Ahg940626 jgi|Araly1|940626|scaffold_601170.1
Length=870

 Score = 1498 bits (811),  Expect = 0.0
 Identities = 851/870 (98%), Gaps = 3/870 (0%)
 Strand=Plus/Plus

Query  106  GAGAGAGGGGGAAACCCTAGATTCGATCTCCATTCGATTTGATTCGTTTCTCGAATCGAA  165
            |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct  1    GAGAGA-GGGGAAACCCTAGATTCGATCTCCATTCGATTTGGTTCGTTTGTCGAATCGAA  59

Query  166  GCGATGGTTTTCTACTTCAAGGCCCGTCCTGATGCTGGCGACTACACCATCTTCATGGGG  225
            |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  60   GCGATGGTGTTCTACTTCAAGGCCCGACCGGATGCTGGCGACTACACCATCTTCATGGGG  119

Query  226  CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT  285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT  179

Query  286  CACGTGGATAAAATGTCGTCAGCTCATGTTTACTTGAGGCTTCATAGAGGCCAAAGTTTT  345
            ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct  180  CACGTGGATAAAATGTCGTCAGCTCATGTTTACCTGAGGCTTCACAGAGGCCAAAGTTTT  239

Query  346  GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT  299

Query  406  CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA  465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA  359

Query  466  ACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC  525
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  ACTGCTTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC  419

Query  526  AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGACTGAACAAAACAAAAGTTGAAAGA  585
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  420  AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGATTGAACAAAACAAAAGTTGAAAGA  479

Query  586  ACCCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCCGCAGAAAGGGCAGAGAGGAAA  645
            || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  480  ACTCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCTGCAGAAAGGGCAGAGAGGAAA  539

Query  646  CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA  705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  540  CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA  599

Query  706  TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC  765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  600  TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC  659

Query  766  ATTGCTTCAAGCAACAAATCGCTTCAAGAACTTGAAGACGATTTCATGTAAAAGCTCTGA  825
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  660  ATTGCTTCAAGCAACAAATCGCTTCAAGAACTGGAAGACGATTTCATGTAAAAGCTCTGA  719

Query  826  AGAAATGAGAAACAAAACAAACCAAGTCGGTAACATTCTGCCAGAGATGATCTGGTACCG  885
            |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  720  AGAAATGAGAAA-AAA-CAAACCAAGTCGGTAACATTCTGCCAGAGGTGATCTGGTACCG  777

Query  886  TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAACTATGATGTTGATGGTTGTCCG  945
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  778  TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAATTATGATGTTGATGGTTGTCCG  837

Query  946  GTTCTATGTTTTCTTTaaaaaaaTCTTGAA  975
            ||| |||||||||||| |||||||||||||
Sbjct  838  GTTTTATGTTTTCTTTCAAAAAATCTTGAA  867



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45633131649


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5