BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11520.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487989 jgi|Araly1|487989|fgenesh2_kg.6__1123__AT5G11520.1 2362 0.0
> Ahg487989 jgi|Araly1|487989|fgenesh2_kg.6__1123__AT5G11520.1
Length=1499
Score = 2362 bits (1279), Expect = 0.0
Identities = 1416/1481 (96%), Gaps = 14/1481 (1%)
Strand=Plus/Plus
Query 34 AAAAACAAAAATGAAAACTACTCATTTCTCTTCCTCTTCTTCTTCCGATCGCAGGATCGG 93
||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1 AAACACAAAAATGAAAACTACTGATTTCTCTTCTTCTTCCTCTTCCGATCGCAGGATCGG 60
Query 94 TGCTCTGCTCCGTCATCTCAATTCCGGCTCAGATTCGGA-CAACCTGAGCTCTC-TTTAT 151
|||||||||||||||||||| | |||||||||||||||| | | |||||||| | |||||
Sbjct 61 TGCTCTGCTCCGTCATCTCACTGCCGGCTCAGATTCGGATC-ATCTGAGCTC-CGTTTAT 118
Query 152 GCATCTCCGACATCGGGAGGCACCGGTGGTTCTGTTTTCTCTCATCTTGTTCAAGCTCCA 211
|| |||||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 119 GCCTCTCCGACATCGGGAGTCACCGGCGGTTCTGTTTTCGCTCATCTTGTTCAAGCTCCT 178
Query 212 GAGGATCCTATTCTTGGGGTGACAGTTGCATACAACAAAGATCCTAGCCCAGTTAAGCTG 271
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 GAGGATCCTATTCTTGGGGTGACAGTTGCATATAACAAAGATCCTAGCCCAGTTAAGCTG 238
Query 272 AATTTAGGAGTTGGTGCTTACCGAACTGAGGAGGGAAAACCTTTGGTTCTTAATGTTGTG 331
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AATTTGGGAGTTGGTGCTTACCGAACTGAGGAGGGAAAACCTTTGGTTCTTAATGTTGTG 298
Query 332 AGGAAAGCTGAGCAGCAGCTTATCAATGACAGAACAAGAATCAAGGAGTATCTTCCCATT 391
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 299 AGGAAAGCTGAGCAGCAGCTTATCAATGACAGAACAAGAGTTAAGGAGTATCTTCCCATT 358
Query 392 GTTGGATTGGTTGAGTTCAACAAGTTAAGCGCTAAGCTCATACTAGGCGCTGACAGTCCT 451
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 GTTGGATTGGTTGAGTTCAACAAGTTAAGCGCTAAGCTCATATTAGGCGCTGACAGTCCT 418
Query 452 GCTATTCGGGAGAATCGGATTACCACCGTGGAGTGTTTGTCTGGTACTGGTTCTCTGAGA 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTATTCGGGAGAATCGGATTACCACCGTGGAGTGTTTGTCTGGTACTGGTTCTCTGAGA 478
Query 512 GTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAGAAAACAATTTACATCACTCAGCCA 571
|||||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||
Sbjct 479 GTTGGAGGGGAGTTTTTGGCCAAGCATTATCATCAGAAAACAATTTATATTACTCAGCCA 538
Query 572 ACATGGGGAAATCATCCAAAGATTTTCACGCTCGCTGGTTTGACAGTGAAAACTTACCGA 631
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 539 ACATGGGGAAATCATCCAAAGATTTTCACCCTCGCCGGTTTGACAGTGAAAACTTACCGC 598
Query 632 TACTACGATCCAGCGACGCGTGGGTTGAACTTTCAAGGTTTATTAGAAGACCTTGGTGCT 691
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 TACTACGATCCAGCGACGCGTGGGTTGAACTTTCAAGGTTTGTTAGAAGACCTTGGTGCT 658
Query 692 GCCGCACCTGGTTCTATAGTGCTTCTCCATGCCTGTGCCCATAACCCTACTGGTGTTGAT 751
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCCCCAGCTGGTTCTATAGTACTTCTCCATGCCTGTGCCCATAACCCTACTGGTGTTGAT 718
Query 752 CCAACCATTCAACAATGGGAGCAAATCAGGAAGTTGATGCGATCAAAGGGATTGATGCCC 811
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 CCAACCATTCAACAATGGGAGCAAATCAGGCAGTTGATGCGATCAAAGGGATTGATGCCC 778
Query 812 TTCTTCGATAGTGCTTATCAGGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCT 871
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTCTTTGATAGTGCTTATCAGGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCG 838
Query 872 ATTAGGATGTTTGTTGCTGATGGCGGAGAATGCCTCGTTGCTCAAAGTTATGCGAAGAAC 931
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 ATTAGGATGTTTGTTGCTGATGGCGGAGAATGCCTCGTTGCTCAAAGTTATGCGAAAAAC 898
Query 932 ATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATTGTATGCAAATCAGCAGATGTT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATTGTATGCAAATCAGCAGATGTT 958
Query 992 GCGGGGAGAGTTGAAAGCCAACTGAAACTAGTGATAAGGCCAATGTACTCGAGTCCTCCA 1051
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 GCGGGGAGAGTTGAAAGCCAACTGAAACTAGTGATAAGGCCAATGTACTCAAGTCCTCCA 1018
Query 1052 ATCCATGGTGCATCAATCGTGGCTGTAATCCTCCGTGACAAGAATTTGTTCAACGAATGG 1111
|| |||||||||||||| ||||||||||| || || ||||||||||||||||||||||||
Sbjct 1019 ATTCATGGTGCATCAATTGTGGCTGTAATTCTTCGCGACAAGAATTTGTTCAACGAATGG 1078
Query 1112 ACTCTGGAACTGAAGGCCATGGCTGATCGTATCATCAGCATGAGGAAACAGCT-TTTCGA 1170
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 1079 ACTCTGGAACTGAAGGCCATGGCTGATCGTATCATCAGCATGAGAAAACAGCTCTTT-GA 1137
Query 1171 GGCATTACGTACTCGAGGCACTCCTGGAGACTGGAGTCACATCATAAAGCAGATTGGTAT 1230
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 GGCATTACGTACTCGAGGCACTCCTGGAGACTGGAGTCACATCATAAAGCAGATCGGTAT 1197
Query 1231 GTTTACCTTCACAGGGTTAAACCCAGCTCAAGTCTCCTTCATGACTAAAGAGTACCACAT 1290
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTTTACATTCACAGGGTTAAACCCAGCTCAAGTCTCCTTCATGACTAAAGAGTACCACAT 1257
Query 1291 CTACATGACATCTGACGGGAGGATAAGCATGGCTGGTCTGAGTTCGAAGACTGTACCTCA 1350
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1258 CTACATGACATCCGATGGGAGGATAAGCATGGCTGGTCTGAGCTCGAAGACTGTACCGCA 1317
Query 1351 CCTTGCAGACGCTATCCATGCTGTTGTCACCAAAGCCGTCTGAGAAACTGAACACCACCA 1410
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CCTTGCAGACGCTATTCACGCTGTTGTCACCAAAGCCGTCTGAGAAACTGAACACCACCA 1377
Query 1411 TGAC-ACC------AAAGCTTCATAATAAAGATTTTGTTCTTTTCTTTCTATTATAGCAT 1463
|||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1378 TGACCACTTTGGTTAAAGCTTCATAATAAAGATTTTGTGCTTTTCTTTCTATTATAGCAT 1437
Query 1464 TTCCGGCAGTGACAAGATAAA-TGTCGTTACTATTATTATT 1503
||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1438 TTCCGGCAGTGACAAGATAAAATGTCGTTACTATTACTATT 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5