BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11650.1 Length=1571 Score E Sequences producing significant alignments: (Bits) Value Ahg488004 jgi|Araly1|488004|fgenesh2_kg.6__1138__AT5G11650.1 2396 0.0 Ahg920845 jgi|Araly1|920845|scaffold_102126.1 364 8e-100 Ahg936456 jgi|Araly1|936456|scaffold_500647.1 361 1e-98 Ahg948625 jgi|Araly1|948625|scaffold_800512.1 359 4e-98 Ahg946882 jgi|Araly1|946882|scaffold_703111.1 161 1e-38 > Ahg488004 jgi|Araly1|488004|fgenesh2_kg.6__1138__AT5G11650.1 Length=1543 Score = 2396 bits (1297), Expect = 0.0 Identities = 1450/1521 (95%), Gaps = 21/1521 (1%) Strand=Plus/Plus Query 54 ttt-tttttACTATTTGTGATTTTGAATTTTCCGGCGATGGCGTCAACGT-CGGCGGAAA 111 ||| ||||||| ||||||| |||||| ||||||||||||||||||||| | ||||||||| Sbjct 32 TTTATTTTTACGATTTGTGTTTTTGATTTTTCCGGCGATGGCGTCAAC-TCCGGCGGAAA 90 Query 112 TGGACCAATTAACATCAGGCGCGAGCAATCGGATAATATTTATCTTGAGAACGCTTAGGA 171 |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 91 TGGAACAATTGACATCAGGCGCGAGTAATCGGATAATATTTATCTTGAGAACGCTAAGGA 150 Query 172 AGTgtctcgtcttcgttctctctctcgtcctttctcttctccttattcttcgtctccgtc 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 151 AGTGTCTCGTCTTCGTTCTCTCTCTCGTCCTTTCTCTTCTCCTTATTCTTCGTCTCCGTC 210 Query 232 ctcgtcgccgtgtctctcctctttcATCGCCTGAGGATGAGGCTGTTCCGGCTCCTTCGA 291 |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct 211 CTCGTCGCCGTGTCTCGCCTCTTTCATCGCCGGAGGAGGAGGCTGTTCCGGCTCCTTCGA 270 Query 292 GGCGATGGAGACGGAAGATGGCGTGGAAGCTGGAGGAGGAAGATACGGCTAGACGTCGTT 351 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 GGCGATGGAGGCGGAAGATGGCGTGGAAGCTGGAGGAGGAAGATACGGCTAGACGTCGTT 330 Query 352 CCTTAGCGGAAGGCGTTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACG 411 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 331 CCTTAGCAGAAGGCGTTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATG 390 Query 412 GACGTCGTGGTAACGCTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGG 471 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 GCCGTCGTGGTAACGCTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGG 450 Query 472 GGATTTTGATTATTATCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTA 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 451 GGATTTTGATTATTATCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCCA 510 Query 532 AGCAGCTAAACGCGAGTAATTTAGGTGTATACGCAATGGACTGGATTGGTCACGGTGGGA 591 ||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 AGCAGTTGAACTCTAGTAATTTAGGTGTATACGCAATGGACTGGATTGGTCACGGTGGGA 570 Query 592 GTGATGGTTTGCATGGTTATGTTCCTTCTCTTGATTATGTTGTTTCCGACACTGAAGCTT 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 GTGATGGTTTGCATGGTTATGTTCCTTCTCTTGATTATGTTGTTTCCGACACTGAAGCTT 630 Query 652 TCTTGGAAAAGATTAGGTCTGAGAATCCGGGGGTTCCGTGTTTCCTCTTTGGTCACTCTA 711 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 631 TCTTGGAAAAGATTAGGTCTGAGAATCCGGGGGTTCCGTGTTTCCTCTTTGGTCATTCTA 690 Query 712 CCGGTGGAGCTGTGGTTTTGAAGGCAGCTTCATCTCCCTCTATTGAAGATATGTTAGCCG 771 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 691 CCGGTGGAGCTGTGGTTTTGAAGGCAGCTTCATCTCCCTCTATCGAAGATATGTTAGCCG 750 Query 772 GTATTGTCCTAACATCGCCTGCACTCCGTGTCAAACCCGCTCATCCCATTGTCGGGGCAA 831 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 751 GTATTGTCCTAACATCGCCTGCGCTTCGTGTCAAACCCGCTCATCCCATTGTCGGGGCAA 810 Query 832 TAGCTCCAATCTTCTCATTGCTCGCACCAAGGTTCCAATTCAAAGGAGCAAACAAGAGAG 891 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 811 TAGCTCCAATCTTCTCATTGGTCGCACCAAGGTTCCAATTCAAAGGAGCAAACAAGAGAG 870 Query 892 GCATTCCGGTCTCAAGAGACCCTGAAGCTCTCTTAGCCAAGTACTCTGATCCGTTAGTCT 951 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 871 GCATTCCGGTCTCAAGAGACCCTGAAGCTCTCTTAGCCAAATACTCTGATCCGTTAGTCT 930 Query 952 ACACTGGTCCGATTAGAGTCCGAACAGGGTATGAGATTCTTCGCATAACGGCTTACTTGA 1011 |||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||| Sbjct 931 ACACTGGTCCAATTAGGGTCCGAACAGGGCATGAGATTCTTCGCATAACAGCTTACTTGA 990 Query 1012 CCCGGAACTTCAAATCTGTTACAGTGCCTTTCTTTGTTCTCCATGGTACAGAGGACAAAG 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 CCCGGAACTTCAAATCTGTTACAGTGCCTTTCTTTGTTCTCCATGGTACAGAGGACAAAG 1050 Query 1072 TCACTGATCCACTAGCTTCCCAAGACTTGTATAATCAGGCACCATCAGTTTTCAAAGACA 1131 ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| Sbjct 1051 TCACTGATCCACTAGCTTCACAAGACTTGTATAATCAGGCTCCATCAATTTTCAAAGACA 1110 Query 1132 TCAAACTCTATGACGGTTTCTTACACGACCTTCTCTTTGAACCTGAGCGTGAGGAAGTCG 1191 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1111 TCAAACTCTATGACGGTTTCTTACACGATCTTCTCTTTGAACCTGAGCGTGAGGAAGTCG 1170 Query 1192 GTCGTGATATCATAGATTGGATGATGAATCGGCTTGACGATGTTAACGGATCAGCAGCTA 1251 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1171 GTCGTGATATCATTGATTGGATGATGAAGCGGCTTGACGATGTTAACGGATCAGCAGCTG 1230 Query 1252 GCCTCTGGTAAAAGATCAAATGAGACGTCAGAGGTCTTCATCTTCTATAGATAGTTGTGA 1311 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1231 GGATCTGGTAAAAGATCAAATGAGATATCAGAGGTCTTCATCTTCTATAGATAGTTGTGA 1290 Query 1312 TACAAATGGTGTGATTGTAAAATCAGAAACCAAGTGTAGGAGATACATAATTACATATCA 1371 ||||||||||||||||||||||||||||||||||||||||||||||||| | | | | | Sbjct 1291 TACAAATGGTGTGATTGTAAAATCAGAAACCAAGTGTAGGAGATACATA-T-A-A-A--A 1344 Query 1372 CATGGGTTTAATCTATGAATTGTTTGATTTTTGATATTCGCTGTGACGATCTTTTGGGCC 1431 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1345 --TGGGCTTAATCTATGAATTGTTTGATTTTTGATATTCGCTGTGACGATCTTTTGGGCC 1402 Query 1432 TATTTTGAAGGGCATTGTTGCC-ATTGAGCCTATATGGGTAT-ATGTG-A--t-t-ttt- 1483 ||||||||||||||||||| || ||||||||||||||| ||| || || | | | ||| Sbjct 1403 TATTTTGAAGGGCATTGTTTCCCATTGAGCCTATATGGCTATTATATGTAAATATATTTA 1462 Query 1484 ttttttggtttttGGGCAATGTTATATGTATATA-ATCAATGTAAATTTGGGTGGATTTT 1542 |||||| |||||||||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 1463 TTTTTTATTTTTTGGGCAATATAATATGTATATTTATCAATGTAAATTTGGGTGGATTTT 1522 Query 1543 T-CATTTTTCTAATTTAAACT 1562 | |||||||| |||||||||| Sbjct 1523 TTCATTTTTCAAATTTAAACT 1543 > Ahg920845 jgi|Araly1|920845|scaffold_102126.1 Length=304 Score = 364 bits (197), Expect = 8e-100 Identities = 209/215 (97%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426 ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTTTTGTTCGTTGTTTTATGGCCGTCGTGGTAACG 78 Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 138 Query 487 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGCTAAACGCGA 546 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 139 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGTTAAACTCGA 198 Query 547 GTAATTTAGGTGTATACGCAATGGACTGGATTGGT 581 ||||||| ||||||||||||||||||||||||||| Sbjct 199 GTAATTTGGGTGTATACGCAATGGACTGGATTGGT 233 > Ahg936456 jgi|Araly1|936456|scaffold_500647.1 Length=304 Score = 361 bits (195), Expect = 1e-98 Identities = 207/213 (97%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATGGCCGTCGTGGTAACG 78 Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 138 Query 487 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGCTAAACGCGA 546 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 139 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGTTAAACTCGA 198 Query 547 GTAATTTAGGTGTATACGCAATGGACTGGATTG 579 ||||||| ||||||||| ||||||||||||||| Sbjct 199 GTAATTTGGGTGTATACACAATGGACTGGATTG 231 > Ahg948625 jgi|Araly1|948625|scaffold_800512.1 Length=304 Score = 359 bits (194), Expect = 4e-98 Identities = 208/215 (97%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATGGCCGTCGTGGTAACG 78 Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGGGGATTTTGATTATTA 486 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGACGAACTTAGGGGGATTTTGATTATTA 138 Query 487 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTAAGCAGCTAAACGCGA 546 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| Sbjct 139 TCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGTTAAGCAGTTAAACTCGA 198 Query 547 GTAATTTAGGTGTATACGCAATGGACTGGATTGGT 581 ||||||| ||||||||||||||||||||||||||| Sbjct 199 GTAATTTGGGTGTATACGCAATGGACTGGATTGGT 233 > Ahg946882 jgi|Araly1|946882|scaffold_703111.1 Length=256 Score = 161 bits (87), Expect = 1e-38 Identities = 98/103 (95%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 367 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACGGACGTCGTGGTAACG 426 |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 19 TTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCATTGTTTTATGGCCGTCGTGGTAACG 78 Query 427 CTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAG 469 ||||||||||||||||||||||||||||| || |||||||||| Sbjct 79 CTTTATTCTCTCGGTCGTGGTTGCCTATT-CCAGCGAACTTAG 120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58849428525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5