BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11770.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488014 jgi|Araly1|488014|fgenesh2_kg.6__1148__AT5G11770.1 1578 0.0
> Ahg488014 jgi|Araly1|488014|fgenesh2_kg.6__1148__AT5G11770.1
Length=981
Score = 1578 bits (854), Expect = 0.0
Identities = 955/1000 (96%), Gaps = 22/1000 (2%)
Strand=Plus/Plus
Query 11 TCGTTTGGTTATCACAACTCCACGACGAGAGGaaaaaaaaaaCTCAGAGAGACAAATCTA 70
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 4 TCGTTTGGTTATCACAACTCCACGACGAGAGG-AAAAAAAAACTCAGAGAGAC-AATCTC 61
Query 71 AATGGCGATGATTACGCGCAACACCGCCACGCGCCTCCCTCTCCTCCTCCAATCTCAACG 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AATGGCGATGATTACGCGCAACACCGCCACGCGCCTCCCTCTCCTCCTCCAATCTCAACG 121
Query 131 CGCCGTCGCCGCTGCCTCGGTCTCTCACCTCCACACATCCCTTCCCGCTCTCTCTCCCTC 190
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 122 CGCCGCCGCGGCTGCCTCGGTGTCTCACCTCCACACATCCCTTCCCGCTCTCTCTCCCTC 181
Query 191 CACATCACCGACTTCCTACACCAGACCTGGTCCTCCTTCGACCTCCCCTCCTCCTCCTGG 250
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 182 CACATCACCGACTTCCTACACCAGACCTGGTCCTCCTTCGACTTCCCCTCCTCCTCCTGG 241
Query 251 TCTCTCTAAAGCGGCCGAATTTGTGATCTCCAAGGTCGATGATCTCATGAACTGGGCTCG 310
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 TCTCTCTAAAGCGGCCGAATTTGTGATCTCCAAGGTCGATGATCTCATGAATTGGGCTCG 301
Query 311 TACCGGATCGATCTGGCCTATGACCTTTGGTCTCGCTTGCTGCGCCGTCGAAATGATGCA 370
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TACGGGATCGATCTGGCCTATGACCTTTGGTCTCGCTTGCTGCGCCGTCGAAATGATGCA 361
Query 371 TACCGGTGCTGCTCGCTACGATCTCGATCGATTCGGTATCATCTTCAGGCCTAGTCCTCG 430
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 TACCGGTGCTGCTCGCTACGATCTCGATCGATTCGGTATCATCTTCAGACCTAGTCCTCG 421
Query 431 CCAGTCTGATTGTATGATTGTCGCCGGTACTCTTACCAATAAGATGGCTCCGGCTCTTCG 490
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 422 TCAGTCTGATTGTATGATTGTCGCCGGGACTCTTACCAATAAGATGGCTCCGGCTCTTCG 481
Query 491 CAAGGTTTATGACCAGATGCCTGAGCCAAGGTGGGTGATTTCAATGGGAAGTTGTGCCAA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CAAGGTTTATGACCAGATGCCTGAGCCAAGGTGGGTGATTTCAATGGGAAGTTGTGCCAA 541
Query 551 TGGAGGTGGATACTATCACTACTCCTACTCGGTGGTTCGAGGATGTGACAGAATTGTCCC 610
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct 542 CGGAGGTGGATACTATCATTACTCCTACTCGGTGGTTAGAGGATGTGACAGAATTGTGCC 601
Query 611 AGTCGACATATACGTCCCGGGGTGCCCACCAACCGCTGAGGCTTTGCTCTATGGACTACT 670
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AGTCGACATATACGTCCCTGGGTGCCCACCAACCGCTGAGGCTTTGCTCTATGGACTACT 661
Query 671 CCAGCTTCAGAAGAAAATCAACAGGCGCAAGGATTTCTTGCATTGGTGGAACAAGTGAGC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CCAGCTTCAGAAGAAAATCAACAGGCGCAAGGATTTCTTGCATTGGTGGAACAAGTGAGC 721
Query 731 TTCGAACCCGTCCTCCAATCGTGAAAGGGACTTTTTTCAGACATTTTTACCAAAGTTTGG 790
|| || || ||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 722 ATCAAATCCTTCCTC-AACCGTGAAAGGGACTTTTT-CAGACATTTTTACCAAAGTTTGG 779
Query 791 GGATAATAAATCGTGGACGTTTCATTGCATATTTCTTTGTGGTGGAGATGCCATGTAAAG 850
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 GGATAATAAATCGTGGACGTTTCATTGCATGTTTCTTTGTGGTGGAGATGCCATGTAAAG 839
Query 851 GAGTGTGTTTCTAAGTTTGTTGTGGAAACTTAATAAACTTAAGATGTTTGTTGTCTGAGT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGTGTGTTTCTAAGTTTGTTGTGGAAACTTAATAAACTTAAGATGTTTGTTGTCTGAGT 899
Query 911 TCTTTTATGGGCTCTTTTATTATATATCTCTCTCTACCAGTTTTCAGCTACATGCTGACT 970
|||||||| | || | | |||| |||||||||||||||||||||||||
Sbjct 900 TCTTTTAT----T-----AT-A-A-ATCT------ACCAGTTTTCAGCTACATGCTGACT 941
Query 971 ATTGCTAAATACCTACATATATTTATACATACGAGTGTGT 1010
||||||||||| ||||||||||||||| ||||||||||||
Sbjct 942 ATTGCTAAATATCTACATATATTTATATATACGAGTGTGT 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5