BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11800.1 Length=2231 Score E Sequences producing significant alignments: (Bits) Value Ahg488017 jgi|Araly1|488017|fgenesh2_kg.6__1151__AT5G11800.1 3075 0.0 > Ahg488017 jgi|Araly1|488017|fgenesh2_kg.6__1151__AT5G11800.1 Length=2003 Score = 3075 bits (1665), Expect = 0.0 Identities = 1873/1967 (95%), Gaps = 40/1967 (2%) Strand=Plus/Plus Query 108 TCCGGTTTAATCCAGAACCAGTTGTTCTGCCATGGTGgaaggaa-gaagaagaagaagat 166 ||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||| Sbjct 54 TCCGGTTTAATCCAGAACCAGTTCTTCTGCCATGGTGGAA-GAAGGAGGAAGAAGAAGA- 111 Query 167 tctcgctctcctctcaacagctagctctcctcttacttttactctccttcttcctctgct 226 | ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 112 ---AG--ATCCTCTCAACAACTAGCTCTCCTCTTACTTTTACTCTCCTTCTTCCTCTGCT 166 Query 227 tctccGTCGCGTCTCCTCGAGCTATATCTGATTCGGATCTACTGGATGAAACAGTCGCCA 286 ||||||||| |||||||||||||||||||||||||||||| |||| ||| | ||||||| Sbjct 167 TCTCCGTCGTGTCTCCTCGAGCTATATCTGATTCGGATCTGTTGGAAGAATCCGTCGCCA 226 Query 287 ACTCCTCCTCTTCCGTCGCATCTCTCAACGcttcttcttcttcttctcttGTTAAGCCT- 345 |||||||||| ||||||||||||||||||| |||||||||| |||||||| || Sbjct 227 ACTCCTCCTCCTCCGTCGCATCTCTCAACG------CTTCTTCTTCAATTGTTAAG-CTC 279 Query 346 AAGGAAGGTAGCTTCGCCGACATCATCGATCGTGCTCTTGAAAAAGAGTTCAATGAAAGC 405 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 280 AAGGAAGGTAGCTTCGCCGACATCATCGATCGTGCTCTCGAAAAAGAGTTCAACGAAAGC 339 Query 406 GACCAGAATGAAGTGGCTGATCCTGGAAGCTTCAATAACAGTGTAGCTGGACAACAGGCT 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 GACCAGAATGAAGTGGCTGATCCTGGAAGCTTCAATAACAGTGTAGCTGGACAACAGGCT 399 Query 466 GTTCTGGAAACTGTAGCCCGAGTAAAGTCGACCAAGAAAAATGAGACAAAAGAGGAGAAG 525 |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| Sbjct 400 GTTCTGGAAACTGTAGCCAGAGTAAAGTCAACCAAGAAAAATGAGACAAAAGAGGACAAG 459 Query 526 CGTTTTCAACTCCATGATGTTTTCAACTTGAACAATGATAACAGAGCTGAGGACACTCCA 585 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 460 CGTTTCCAACTCCATGATGTTTTCAATTTGAACAATGATAACAGAGCTGAGGACACTCCT 519 Query 586 ACTCTCATTGATCGAAAAGACAATGTCTTCATCATATCCAATTCCAAATCAAAGTATCCA 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 ACTCTCATTGATCGAAAAGACAATGTCTTCATCATATCCAATTCCAAATCAAAGTATCCA 579 Query 646 GTATTGCAGCTAGACTTGAGACTGATATCAGACCTGGTGGTTGTCATTGTATCTGCAACT 705 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 580 GTATTGCAGCTAGACTTGAGACTGATATCGGACCTGGTGGTTGTCATTGTATCTGCAACT 639 Query 706 TGTGGTGGTATCGCCTTTGCTTGTGCTGGACAGCCGGTGATAACTGGATATTTGCTAGCA 765 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 TGTGGTGGTATCGCCTTTGCTTGTGCTGGACAGCCGGTGATAACTGGATATTTGCTAGCA 699 Query 766 GGATCTATCATTGGGCCTGGAGGATTGAACTTCATCAGTGAGATGGTCCAGGTTGAAACA 825 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 GGATCTATCATTGGGCCTGGAGGATTGAACTTCATCAGTGAGATGGTCCAGGTTGAAACA 759 Query 826 GTTGCCCAGTTTGGTGTGGTATTTCTGCTCTTTGCTTTGGGTCTAGAGTTCTCCACTGCT 885 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 760 GTTGCCCAGTTTGGTGTGGTATTTCTGCTCTTCGCTTTGGGTCTAGAGTTCTCCACTGCT 819 Query 886 AAGCTTAAAGTTGTTCGATCAGTTGCTGTTCTGGGAGGCCTTCTTCAAATTCTTCTATTC 945 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 820 AAGCTTAAAGTTGTTCGATCAGTTGCTGTTCTAGGAGGCCTTCTTCAAATTCTTCTATTC 879 Query 946 ATGTTCTTGTGCGGTATCACAGTGTCGTTATGCGGTGGTAAACGTTCGGAGGGGGTATTT 1005 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 880 ATGTTCTTGTGCGGGATCACAGTGTCGTTATGCGGTGGTAAACATTCGGAGGGGGTGTTT 939 Query 1006 GTAGGAGCCTTTTTGTCAATGTCATCAACTGCGGTGGTGCTGAAGTTTCTCATGGAAAAG 1065 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 940 GTAGGCGCCTTTTTGTCAATGTCATCAACTGCGGTGGTGCTGAAGTTTCTCATGGAAAAA 999 Query 1066 AATTCAACTAATTCTCTTCATGGCCAAGTTACGATTGGAATCCTAATTCTTCAGGACTGT 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 AATTCAACTAATTCTCTTCATGGCCAAGTTACGATTGGAATCCTAATTCTTCAGGACTGT 1059 Query 1126 GCTGTGGGTTTGCTGTTTGCTTTGCTTCCAGTTCTCGAGGGAAATTCTGGCATTGTTCAT 1185 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1060 GCTGTGGGTTTGCTGTTTGCTTTGCTTCCCGTTCTTGAGGGAAATTCTGGCATTGTTCAT 1119 Query 1186 GGAATGTTGTCAATAGGAAAAGTGGTGGTTTTGTTGCTTTCGTTTTTGGCTGTTTTGTCA 1245 |||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||| Sbjct 1120 GGAATGTTGTCAATGGGAAAAGTGGTGGTTGTGTTACTTTCGTTTTTGGCAGTTTTGTCA 1179 Query 1246 ATATTATCACGGACATGTATTCCTTGGTTGCTGAAGCTAATGGTCAGCTTATCGTCACAG 1305 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 ATATTATCACGGACATTTATTCCTTGGTTGCTGAAGCTAATGGTCAGCTTATCGTCACAG 1239 Query 1306 ACAAATGAACTCTATCAGTTAGCGGCTGTTGCGTTTTGTCTACTTGTAGCCTGGTGTAGT 1365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1240 ACAAATGAACTCTATCAGTTAGCGGCTGTTGCGTTTTGTCTACTTGTAGCCTGGTGTAGT 1299 Query 1366 GATAAGCTGGGATTAAGTCTTGAATTGGGTTCTTTTGCTGCGGGGGTCATGATATCCACT 1425 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1300 GATAAGCTGGGATTAAGTCTTGAATTGGGTTCTTTTGCCGCGGGGGTCATGATATCCACT 1359 Query 1426 ACTGATCTCGCTGAACATACATTGGAGCAAATCGAACCCATCCGTAATTTATTTGCTGCT 1485 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1360 ACTGATCTCGCTGAACATACATTGGAGCAAATCGAACCCATCCGTAATTTATTTGCTGCC 1419 Query 1486 CTTTTCCTAGCCAGCATTGGGATGTTAGTTAATGTCCATTTTCTGTGGACACATGTGGAT 1545 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1420 CTTTTCCTAGCCAGCATTGGAATGTTAGTTAATGTCCATTTTCTGTGGACACATGTGGAT 1479 Query 1546 ATACTGTTAGCCTCTGTGATATTAGTTATTATTATAAAGACAACAATAGTTACAACCGTT 1605 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1480 ATACTGTTAGCCTCTGTGATATTAGTAATTATAATAAAGACAACAATAGTTACAACCGTT 1539 Query 1606 GTTAAGGGATTTGGATACAACAATAAGACGGCTCTTCTGGTTGGAATATCTCTGGCTCAG 1665 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1540 GTTAAAGGATTTGGATACAACAATAAGACGGCTCTCCTGGTTGGAATATCTCTGGCTCAG 1599 Query 1666 ATAGGGGAGTTTGCCTTTGTACTACTTAGCCGTGCCTCCAATCTTCACCTCATCGAAGGG 1725 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1600 ATAGGGGAGTTTGCCTTTGTACTACTTAGCCGTGCCTCCAATCTTCACCTCATCGAAGGG 1659 Query 1726 AAACTCTATCTGCTTCTCCTTGGGACAACCGCTCTAAGCCTGGTTACGACACCGCTGGTT 1785 ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 1660 AAACTCTATTTGCTTCTCCTCGGGACAACCGCTCTAAGCCTGGTTACGACACCGCTGATT 1719 Query 1786 TTCAAAATGATACCAGCAGTTGTACATCTTGGGATATTGTTGAAA-TGGTTTTCTCCAGA 1844 ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| Sbjct 1720 TTCAAAATGATACCAGCAGTTGTGCATCTTGGGATATTGTT-AAAGTGGTTTTCTCCAGA 1778 Query 1845 CAGTACTATAGAGAAAGGAGAAATTGTAAGATCAGAAAGTGGGAAACAACGGATGATTCT 1904 ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| Sbjct 1779 CAGTACTATAGAGAAAGGAGAAATTGTAAGATCAGAAAGCGGTAAACAACGGGTGATTCT 1838 Query 1905 AATGTCACGTCAATCCCACAGCTCCTAAAACCACAAAATGTT-CTTCTCAACTAAAGTTT 1963 |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| Sbjct 1839 AATGTCACGTCAATCCCACAGCTCCTAAAACCACAAT-TGTTTCTTCTCAACTGAAGTTT 1897 Query 1964 GGTACACTCAATCAATTTTGAC--aaaagaaaaatgtggaaa--agaaga-ga---a-a- 2013 ||||||| |||||||||||||| |||| ||||||||||||| |||||| || | | Sbjct 1898 GGTACAC-CAATCAATTTTGACCCAAAAAAAAAATGTGGAAAGGAGAAGAAGAGCTACAG 1956 Query 2014 a----a-----gaTTTTAACACTAACATTGTTTGTTTCCTGGGAGTA 2051 | | |||||||||||||||||||||||||||||||||||| Sbjct 1957 ATTTTAACACAGATTTTAACACTAACATTGTTTGTTTCCTGGGAGTA 2003 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83988990225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5