BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11950.1 Length=923 Score E Sequences producing significant alignments: (Bits) Value Ahg488037 jgi|Araly1|488037|fgenesh2_kg.6__1171__AT5G11950.1 1345 0.0 Ahg928093 jgi|Araly1|928093|scaffold_300550.1 195 7e-49 Ahg894539 jgi|Araly1|894539|Al_scaffold_0006_2535 148 5e-35 > Ahg488037 jgi|Araly1|488037|fgenesh2_kg.6__1171__AT5G11950.1 Length=858 Score = 1345 bits (728), Expect = 0.0 Identities = 827/872 (95%), Gaps = 18/872 (2%) Strand=Plus/Plus Query 42 ttctcttttttttttGTTTGACGACCTGAGGGAATACCTTGA-TTTGTAGATTTTTATCC 100 |||| |||||||||||||||||| | ||||||||||| |||| ||||||||||||||||| Sbjct 1 TTCTTTTTTTTTTTTGTTTGACGGCTTGAGGGAATACGTTGATTTTGTAGATTTTTATCC 60 Query 101 ATTAATGGAAGATAAT---CAGCGAAGCAGATTCAGAAAAATCTGTGTCTTTTGCGGAAG 157 | |||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||| Sbjct 61 ACTAATGGAAGATAATAACCAGCGACGCAGATTCAGAAAAATTTGTGTGTTTTGCGGAAG 120 Query 158 CCACTCTGGTCACAGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACTCGT 217 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCACTCTGGTCACCGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACTCGT 180 Query 218 GAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATC 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATC 240 Query 278 CAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGAATCATTCCCAAAGCTTTGATGCC 337 |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| Sbjct 241 CAGGAGAGTCTATGAAGGTGGTTTCCATGTACTCGGGATCATTCCCAAAGCTTTGATGCC 300 Query 338 AATTGAGATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG 397 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AACTGAGATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG 360 Query 398 AAAGGCTGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCTGGAGGTTATGGAAC 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAAGGCTGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCTGGAGGTTATGGAAC 420 Query 458 AATGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGT 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AATGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGT 480 Query 518 TGGTCTATTGAATGTTGATGGGTACTATAACAATTTGCTTGCTTTATTTGATACCGGTGT 577 ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 481 TGGTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCGGTGT 540 Query 578 CGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAA 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAA 600 Query 638 AGAGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACATGCATGTTGCATCGCACGA 697 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 601 AGAGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACAAGCAGGTTGCATCGCACGA 660 Query 698 AAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACAAGAAAACAAGCCGCAATAAAA 757 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 661 AAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACTACAAAACAAGCCGCAATAAAA 720 Query 758 GCAATTATTATTGTTTAGCATAAGCTATTTCCATTTCAAGTTTAGTCTCTAAATTATTTG 817 ||| | ||||||||| ||||||||||||||||| |||||||||| ||| Sbjct 721 ----TTA-----G-----CATAAGCTACTTCCATTTCAAGTTTAGCCTCTAAATTAATTG 766 Query 818 CAGAATCCACAATGTGTATAAGAAAACTCAAATCTTGTTGCAATATGAAACAGCACATTG 877 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 CTGAATCCACAATGTGTATAAGAAAACTCAAATCTTGTTGCAATATGAAACAGCACATTG 826 Query 878 GGTCCCCAACATGAAAATGTTGCTGATTATGT 909 ||| ||||| |||||| ||||||||||||||| Sbjct 827 GGTTCCCAAAATGAAAGTGTTGCTGATTATGT 858 > Ahg928093 jgi|Araly1|928093|scaffold_300550.1 Length=700 Score = 195 bits (105), Expect = 7e-49 Identities = 117/123 (95%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 515 GGTTGGTCTATTGAATGTTGATGGGTACTATAACAATTTGCTTGCTTTATTTGATACCGG 574 |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| | Sbjct 404 GGTTGGTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCAG 463 Query 575 TGTCGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGC 634 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 464 TTTCGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTTTGGTTTCTGCTCCAACAGC 523 Query 635 CAA 637 ||| Sbjct 524 CAA 526 > Ahg894539 jgi|Araly1|894539|Al_scaffold_0006_2535 Length=612 Score = 148 bits (80), Expect = 5e-35 Identities = 100/110 (91%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 105 ATGGAAGATAATCAGCGAAGCAGATTCAGAAAAATCTGTGTCTTTTGCGGAAGCCACTCT 164 ||||| || |||||| ||| || |||||| ||||||||||| ||||||||||| |||||| Sbjct 1 ATGGAGGAAAATCAGAGAACCAAATTCAGTAAAATCTGTGTTTTTTGCGGAAGTCACTCT 60 Query 165 GGTCACAGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACT 214 ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 61 GGTCACAGAGAAGTTTTCAGTGATGCTGCAATCGAACTTGGCAATGAACT 110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34234379466 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5