BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12100.1 Length=2718 Score E Sequences producing significant alignments: (Bits) Value Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992 3864 0.0 Ahg895182 jgi|Araly1|895182|Al_scaffold_0006_3178 571 8e-162 > Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992 Length=3609 Score = 3864 bits (2092), Expect = 0.0 Identities = 2380/2518 (95%), Gaps = 24/2518 (1%) Strand=Plus/Plus Query 12 CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1094 CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA 1153 Query 72 CCGTCAAGTTCACTGACTCTGTCTCAG---CATGCTCATGTCGTCGTCTCTTCTCTGCCT 128 |||||||||||||||| ||| |||||| |||||||| | ||||||||||||| |||| Sbjct 1154 CCGTCAAGTTCACTGAGTCTTTCTCAGCATCATGCTCA--T-GTCGTCTCTTCTCAGCCT 1210 Query 129 CCACCGACCCCGAACCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCA-C- 186 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1211 CCACCGACCCCGAATCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCG 1270 Query 187 ----CG--GA--G--ACGAAAAGCTACGGAATCTCCGAGTTCTTCTCCAGCAGAATCGAA 236 || || | ||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1271 GAGACGAAGAGCGACACGAAAAGCTAAGGAATCTCCGAGTTCTTCTTCAGCAGAATCGAA 1330 Query 237 TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCTTTCGCAT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1331 TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCGTTCACAT 1390 Query 297 CGCCGAAAGAGCTCTTCTCCGCCTTCTCGTTATCATCTCCGTCGTTGAAACACGATTTCT 356 ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| Sbjct 1391 CGCCGAAAGAGCTCTTCTCTGCCTTCGCGCTATCATCTCCGTCGTTGAAACACGATTTCT 1450 Query 357 CCTACTTGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT 416 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1451 CCTACATGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT 1510 Query 417 TGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGCTCAGATTCGTTAACGCTTTTGC 476 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1511 TGTTCTTCGCTTTGAGGAATGAAGGTATTTTTCCCAGCTCAGATTCGTTAACGCTTTTGC 1570 Query 477 TTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACTATAAACGTGTTTTTGAACATTC 536 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 1571 TTGATCATCTTGTGAAGACAAAACAATTCAGAGTGACTATAAACGTATTTTTGAATATTC 1630 Query 537 TCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTGA 596 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1631 TGGAATCGGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTCA 1690 Query 597 AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAACCGGATGAAGCACGATAGAATCT 656 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1691 AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAATCGGATGAAGCACGATAGAATCT 1750 Query 657 ATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGATTGTGTAAAGGGA-AAAGGATG 715 ||||| ||||||||| |||||||||||||||||||| || ||||||| || | | |||| Sbjct 1751 CTCCCACTGTGTTTATATACAATGTCCTTATTGATGGGTTATGTAAAGTGAGACA-GATG 1809 Query 716 AATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGTTACCTTCTTTGATA 775 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1810 AAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGCTACCTTCTTTGATA 1869 Query 776 ACGTATAACACGTTGATTGATGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA 835 ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1870 ACGTACAACACGTTGATCGACGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA 1929 Query 836 GTGAGAGAACGTATGAAAGCGGATCATATCGAACCGAGTCTTATTACGTTTAATACTTTG 895 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1930 GTGAGAGAACGTATGAAAGCGGATAATATCGAACCGAGTCTTATTACGTTTAATACTTTG 1989 Query 896 CTTAAGGGGCTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG 955 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1990 CTTAAGGGACTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG 2049 Query 956 AAGGATCTGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG 1015 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2050 AAGGATCAGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG 2109 Query 1016 AGTAACGAGAAAGCTGAGGCTGCGTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG 1075 |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 2110 AGTAACGATAAAGCTGATGCTGCTTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG 2169 Query 1076 AAAATGAATGCTTATACTTGTAGCATTTTGTTGAATGCGTTGTGCAAAGAAGGAAAGATC 1135 |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| Sbjct 2170 AAAATGAATGCTTATACTTGTAGCATATTGCTGAATGCGTTGTGCAAAGAGGGAAAGATA 2229 Query 1136 GAGAAAGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACGAGGTT 1195 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2230 GAGAAGGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACAAGGTT 2289 Query 1196 ATTTATAACACTATGATTGATGGATACTGTCGAAAAGGTGATCTGGTTGGTGCTCGTATG 1255 ||||||||||| |||||||||||||||| ||| ||||||||||| ||||| ||||| ||| Sbjct 2290 ATTTATAACACAATGATTGATGGATACTCTCGGAAAGGTGATCTAGTTGGAGCTCGGATG 2349 Query 1256 AAAATTGAAGCAATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGTAT-AATTGTTT 1314 ||||| || || ||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2350 AAAATCGATGCCATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGT-TCAATTGTTT 2408 Query 1315 GATTAGGAGATTTTGTGAATTGGGGGAAATGGAGAATGCTGAGAAAGAGGTTAACAAAAT 1374 |||||||| |||||||||||||||||| ||||| |||||| || |||||||||||||||| Sbjct 2409 GATTAGGACATTTTGTGAATTGGGGGATATGGATAATGCTCAGCAAGAGGTTAACAAAAT 2468 Query 1375 GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG 1434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2469 GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG 2528 Query 1435 GAGAAAATATGAATTTGATAAGTGCTTCGACATTCTTAAAGAAATGGAAGATAACGGGAC 1494 |||||| |||||||||||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 2529 GAGAAAGTATGAATTTGATAAGTGCTTCGACCTTCTTAAAGAAATGGAAGACATCGGGAC 2588 Query 1495 AATGCCGAATGTAGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT 1554 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2589 GATGCCGAATGTTGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT 2648 Query 1555 TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGATAGAGGGGTTTCACCGAAAGTAAG 1614 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 2649 TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGACAGAGGGGTTTCACCGAATGTAAG 2708 Query 1615 GATATATAACATGCTAATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG 1674 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2709 GATATATAACATGCTTATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG 2768 Query 1675 GTTTTCTAAGGAGATGCTCAAAAAGGGAATAGAATTAAACCTGGTGACTTATAACACCCT 1734 ||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 2769 GTTCTCTGAGGAGATGTTCAAAAAGGGAATAGAATTAAATCTGGTGACTTATAACACCCT 2828 Query 1735 CATTGATGGGTTGTCCATGACCGGAAAATTATCAGAAGCTGAAGACTTACTTCTTGAAAT 1794 |||||||||||||||||||| ||| |||||| |||||||||||||| | ||||| ||||| Sbjct 2829 CATTGATGGGTTGTCCATGAACGGGAAATTAGCAGAAGCTGAAGACATGCTTCTCGAAAT 2888 Query 1795 CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATATGG 1854 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2889 CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATACAG 2948 Query 1855 ATTCGCTGGAAACGTGCAAAGATGTATCGCGCTCTATGAAGAGATGAAGAGATCAGGAAT 1914 ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 2949 ATTTGCTGGAAACGTGCAAAGATGTATCGCGCTGTATGAAGAGATGAAGGGATCAGGAAT 3008 Query 1915 AAAACCCACTCTGAAGACATATCATCTTTTGATCAGTTTGTGTACCAAGGAGGGGATAGA 1974 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 3009 AAAACCCACTCTGAAGATATATCATCTTTTGATCAGTTTGTGCACCAAGGAGGGGATAGA 3068 Query 1975 GCTCACAGAGAGATTATTTGGAGAGATGTCATTGAAACCAGACTTATTAGTTTACAATGG 2034 ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3069 GCTCACAGAGAAAATATTTGGAGAGATGTCGTTGAAACCAGACTTATTAGTTTACAATGG 3128 Query 2035 GGTTCTCCATTGCTACGCCGTACATGGAGACATGGAAAAGGCTTTTAATTTGCAGAAGCA 2094 ||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 3129 GGTTCTCCATTGCTATGCCGTACATGGAGATATGGATAAGGCTTTTAATTTGCAGAAGCA 3188 Query 2095 GATGATTGAAAAGAGTATCGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA 2154 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3189 GATGATTGAAAAGAGTATTGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA 3248 Query 2155 ACTGAAGGTAGGAAAACTGTGCGAGGTTAGGAGTTTGATTGACGAGATGAATGCCCGGGA 2214 ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 3249 ACTGAAGCTAGGAAAACTGTGTGAGGTTAGGAGTTTGATTGACGAGATGAAAGCCCGGGA 3308 Query 2215 AATGGAACCTGAAGCTGATACATATAACATAATAGTGAAAGGGCATTGCGAGGTGAAAGA 2274 ||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||| || Sbjct 3309 AATGGAACCTGAAGCTGATACATATGACATAATAGTGAAGGGGCATTGTGAGATGAAGGA 3368 Query 2275 TTATATGAGTGCATATGTTTGGTACAGAGAGATGCAAGAGAAGGGTTTTCTGTTAGATGT 2334 ||||||| | |||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 3369 TTATATGGGAGCATATGTTTGGTACAGAGAGATGCAAGAGAAAGGTTTGCTATTAGATGT 3428 Query 2335 TTGCATAGGCAACGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA 2394 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3429 TTGCATAGGCGATGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA 3488 Query 2395 GATTGTCATTTCTGAGATGAATGGTCGCATGCTAGGTGATGTAACAGTGGATGAAGATCT 2454 || |||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| Sbjct 3489 GAATGTCATTTCTGAAATGAATGGTCGCAAGCTAGGTGATGTAATAGTGGATGAGGATCT 3548 Query 2455 ATCTGCAACAGAGA-A-GCTTTGAAAATCAATAATGTGTGCTTCAAGATAAATCCTTT 2510 |||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||| Sbjct 3549 ATCTGCAACAGAGAGAAGCTTTGAAAATCAAGAATGTGTGCTTCAAGATAAATACTTT 3606 > Ahg895182 jgi|Araly1|895182|Al_scaffold_0006_3178 Length=579 Score = 571 bits (309), Expect = 8e-162 Identities = 357/380 (94%), Gaps = 3/380 (1%) Strand=Plus/Plus Query 395 ATGATTTCTGAAGCTGCGGATTTGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGC 454 ||||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||| Sbjct 202 ATGATTTCTGAAGCTGCAGATTTGTTCTTCGCTTTGAGGAGTGAAGGTATTTTTCCCAGC 261 Query 455 TCAGATTCGTTAACGCTTTTGCTTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACT 514 |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| Sbjct 262 TCAGATTCGTTAACACTGTTGCTTGATCATCTTGTGAAGGCGAAACAATTCAGAGTGACT 321 Query 515 ATAAACGTGTTTTTGAACATTCTCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGG 574 ||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 322 ATAAACGTGTTCTTGAATATTCTGGATTCTGATTTTCGTCCGAGTAAGTTCATGTATGGG 381 Query 575 AAAGCAATTCAAGCTGCTGTGAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAC 634 ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 382 AAAGCAATTCAAGCTACCGTCAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAT 441 Query 635 CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGA 694 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGG 501 Query 695 TTGTGTAAAGGGA-AAAGGATGAATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG 753 || ||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 502 TTATGTAAAGTGAGAAAG-ATGAAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG 560 Query 754 AAGATTGTTACCTTCTTTGA 773 ||||||||| | |||||||| Sbjct 561 AAGATTGTTGC-TTCTTTGA 579 Score = 241 bits (130), Expect = 3e-62 Identities = 163/178 (92%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 26 ATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCACCGTCAAGTTCACT 85 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGACTCGCTTAAGACTCGTTTCGAAATCTTCTCGTTACGCCACCGTCAAGTTCACT 60 Query 86 GACTCTGTCTCAGCAT---GCTCATGTCGTCGTCTCTTCTCTGCCTCCACCGACCCCGAA 142 || ||||||||||||| |||||||||||| ||| | ||| ||||||||||||||| || Sbjct 61 GAGTCTGTCTCAGCATCATGCTCATGTCGTC-TCT-T-CTCAGCCTCCACCGACCCCAAA 117 Query 143 CCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCGGAGACGAAAAGC 200 ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||| Sbjct 118 TCCGAATCTCAACCCGCACAAGCTCCGCCTACGAATGCCGTCACCGGAGACGAAGAGC 175 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102538939540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5