BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G12100.1

Length=2718
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992          3864    0.0   
  Ahg895182 jgi|Araly1|895182|Al_scaffold_0006_3178                    571    8e-162


> Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992
Length=3609

 Score = 3864 bits (2092),  Expect = 0.0
 Identities = 2380/2518 (95%), Gaps = 24/2518 (1%)
 Strand=Plus/Plus

Query  12    CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA  71
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1094  CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA  1153

Query  72    CCGTCAAGTTCACTGACTCTGTCTCAG---CATGCTCATGTCGTCGTCTCTTCTCTGCCT  128
             |||||||||||||||| ||| ||||||   ||||||||  | ||||||||||||| ||||
Sbjct  1154  CCGTCAAGTTCACTGAGTCTTTCTCAGCATCATGCTCA--T-GTCGTCTCTTCTCAGCCT  1210

Query  129   CCACCGACCCCGAACCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCA-C-  186
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  1211  CCACCGACCCCGAATCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCG  1270

Query  187   ----CG--GA--G--ACGAAAAGCTACGGAATCTCCGAGTTCTTCTCCAGCAGAATCGAA  236
                 ||  ||  |  ||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct  1271  GAGACGAAGAGCGACACGAAAAGCTAAGGAATCTCCGAGTTCTTCTTCAGCAGAATCGAA  1330

Query  237   TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCTTTCGCAT  296
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  1331  TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCGTTCACAT  1390

Query  297   CGCCGAAAGAGCTCTTCTCCGCCTTCTCGTTATCATCTCCGTCGTTGAAACACGATTTCT  356
             ||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct  1391  CGCCGAAAGAGCTCTTCTCTGCCTTCGCGCTATCATCTCCGTCGTTGAAACACGATTTCT  1450

Query  357   CCTACTTGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT  416
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1451  CCTACATGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT  1510

Query  417   TGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGCTCAGATTCGTTAACGCTTTTGC  476
             |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1511  TGTTCTTCGCTTTGAGGAATGAAGGTATTTTTCCCAGCTCAGATTCGTTAACGCTTTTGC  1570

Query  477   TTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACTATAAACGTGTTTTTGAACATTC  536
             ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct  1571  TTGATCATCTTGTGAAGACAAAACAATTCAGAGTGACTATAAACGTATTTTTGAATATTC  1630

Query  537   TCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTGA  596
             | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1631  TGGAATCGGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTCA  1690

Query  597   AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAACCGGATGAAGCACGATAGAATCT  656
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1691  AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAATCGGATGAAGCACGATAGAATCT  1750

Query  657   ATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGATTGTGTAAAGGGA-AAAGGATG  715
              ||||| ||||||||| |||||||||||||||||||| || ||||||| || | | ||||
Sbjct  1751  CTCCCACTGTGTTTATATACAATGTCCTTATTGATGGGTTATGTAAAGTGAGACA-GATG  1809

Query  716   AATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGTTACCTTCTTTGATA  775
             || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1810  AAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGCTACCTTCTTTGATA  1869

Query  776   ACGTATAACACGTTGATTGATGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA  835
             ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  1870  ACGTACAACACGTTGATCGACGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA  1929

Query  836   GTGAGAGAACGTATGAAAGCGGATCATATCGAACCGAGTCTTATTACGTTTAATACTTTG  895
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1930  GTGAGAGAACGTATGAAAGCGGATAATATCGAACCGAGTCTTATTACGTTTAATACTTTG  1989

Query  896   CTTAAGGGGCTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG  955
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1990  CTTAAGGGACTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG  2049

Query  956   AAGGATCTGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG  1015
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2050  AAGGATCAGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG  2109

Query  1016  AGTAACGAGAAAGCTGAGGCTGCGTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG  1075
             |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  2110  AGTAACGATAAAGCTGATGCTGCTTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG  2169

Query  1076  AAAATGAATGCTTATACTTGTAGCATTTTGTTGAATGCGTTGTGCAAAGAAGGAAAGATC  1135
             |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| 
Sbjct  2170  AAAATGAATGCTTATACTTGTAGCATATTGCTGAATGCGTTGTGCAAAGAGGGAAAGATA  2229

Query  1136  GAGAAAGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACGAGGTT  1195
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  2230  GAGAAGGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACAAGGTT  2289

Query  1196  ATTTATAACACTATGATTGATGGATACTGTCGAAAAGGTGATCTGGTTGGTGCTCGTATG  1255
             ||||||||||| |||||||||||||||| ||| ||||||||||| ||||| ||||| |||
Sbjct  2290  ATTTATAACACAATGATTGATGGATACTCTCGGAAAGGTGATCTAGTTGGAGCTCGGATG  2349

Query  1256  AAAATTGAAGCAATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGTAT-AATTGTTT  1314
             ||||| || || ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct  2350  AAAATCGATGCCATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGT-TCAATTGTTT  2408

Query  1315  GATTAGGAGATTTTGTGAATTGGGGGAAATGGAGAATGCTGAGAAAGAGGTTAACAAAAT  1374
             |||||||| |||||||||||||||||| ||||| |||||| || ||||||||||||||||
Sbjct  2409  GATTAGGACATTTTGTGAATTGGGGGATATGGATAATGCTCAGCAAGAGGTTAACAAAAT  2468

Query  1375  GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG  1434
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2469  GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG  2528

Query  1435  GAGAAAATATGAATTTGATAAGTGCTTCGACATTCTTAAAGAAATGGAAGATAACGGGAC  1494
             |||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct  2529  GAGAAAGTATGAATTTGATAAGTGCTTCGACCTTCTTAAAGAAATGGAAGACATCGGGAC  2588

Query  1495  AATGCCGAATGTAGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT  1554
              ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2589  GATGCCGAATGTTGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT  2648

Query  1555  TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGATAGAGGGGTTTCACCGAAAGTAAG  1614
             |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  2649  TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGACAGAGGGGTTTCACCGAATGTAAG  2708

Query  1615  GATATATAACATGCTAATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG  1674
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2709  GATATATAACATGCTTATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG  2768

Query  1675  GTTTTCTAAGGAGATGCTCAAAAAGGGAATAGAATTAAACCTGGTGACTTATAACACCCT  1734
             ||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct  2769  GTTCTCTGAGGAGATGTTCAAAAAGGGAATAGAATTAAATCTGGTGACTTATAACACCCT  2828

Query  1735  CATTGATGGGTTGTCCATGACCGGAAAATTATCAGAAGCTGAAGACTTACTTCTTGAAAT  1794
             |||||||||||||||||||| ||| |||||| |||||||||||||| | ||||| |||||
Sbjct  2829  CATTGATGGGTTGTCCATGAACGGGAAATTAGCAGAAGCTGAAGACATGCTTCTCGAAAT  2888

Query  1795  CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATATGG  1854
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  2889  CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATACAG  2948

Query  1855  ATTCGCTGGAAACGTGCAAAGATGTATCGCGCTCTATGAAGAGATGAAGAGATCAGGAAT  1914
             ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct  2949  ATTTGCTGGAAACGTGCAAAGATGTATCGCGCTGTATGAAGAGATGAAGGGATCAGGAAT  3008

Query  1915  AAAACCCACTCTGAAGACATATCATCTTTTGATCAGTTTGTGTACCAAGGAGGGGATAGA  1974
             ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  3009  AAAACCCACTCTGAAGATATATCATCTTTTGATCAGTTTGTGCACCAAGGAGGGGATAGA  3068

Query  1975  GCTCACAGAGAGATTATTTGGAGAGATGTCATTGAAACCAGACTTATTAGTTTACAATGG  2034
             ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  3069  GCTCACAGAGAAAATATTTGGAGAGATGTCGTTGAAACCAGACTTATTAGTTTACAATGG  3128

Query  2035  GGTTCTCCATTGCTACGCCGTACATGGAGACATGGAAAAGGCTTTTAATTTGCAGAAGCA  2094
             ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  3129  GGTTCTCCATTGCTATGCCGTACATGGAGATATGGATAAGGCTTTTAATTTGCAGAAGCA  3188

Query  2095  GATGATTGAAAAGAGTATCGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA  2154
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  3189  GATGATTGAAAAGAGTATTGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA  3248

Query  2155  ACTGAAGGTAGGAAAACTGTGCGAGGTTAGGAGTTTGATTGACGAGATGAATGCCCGGGA  2214
             ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  3249  ACTGAAGCTAGGAAAACTGTGTGAGGTTAGGAGTTTGATTGACGAGATGAAAGCCCGGGA  3308

Query  2215  AATGGAACCTGAAGCTGATACATATAACATAATAGTGAAAGGGCATTGCGAGGTGAAAGA  2274
             ||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||| ||
Sbjct  3309  AATGGAACCTGAAGCTGATACATATGACATAATAGTGAAGGGGCATTGTGAGATGAAGGA  3368

Query  2275  TTATATGAGTGCATATGTTTGGTACAGAGAGATGCAAGAGAAGGGTTTTCTGTTAGATGT  2334
             ||||||| | |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct  3369  TTATATGGGAGCATATGTTTGGTACAGAGAGATGCAAGAGAAAGGTTTGCTATTAGATGT  3428

Query  2335  TTGCATAGGCAACGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA  2394
             |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3429  TTGCATAGGCGATGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA  3488

Query  2395  GATTGTCATTTCTGAGATGAATGGTCGCATGCTAGGTGATGTAACAGTGGATGAAGATCT  2454
             || |||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct  3489  GAATGTCATTTCTGAAATGAATGGTCGCAAGCTAGGTGATGTAATAGTGGATGAGGATCT  3548

Query  2455  ATCTGCAACAGAGA-A-GCTTTGAAAATCAATAATGTGTGCTTCAAGATAAATCCTTT  2510
             |||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||
Sbjct  3549  ATCTGCAACAGAGAGAAGCTTTGAAAATCAAGAATGTGTGCTTCAAGATAAATACTTT  3606


> Ahg895182 jgi|Araly1|895182|Al_scaffold_0006_3178
Length=579

 Score =  571 bits (309),  Expect = 8e-162
 Identities = 357/380 (94%), Gaps = 3/380 (1%)
 Strand=Plus/Plus

Query  395  ATGATTTCTGAAGCTGCGGATTTGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGC  454
            ||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||
Sbjct  202  ATGATTTCTGAAGCTGCAGATTTGTTCTTCGCTTTGAGGAGTGAAGGTATTTTTCCCAGC  261

Query  455  TCAGATTCGTTAACGCTTTTGCTTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACT  514
            |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  262  TCAGATTCGTTAACACTGTTGCTTGATCATCTTGTGAAGGCGAAACAATTCAGAGTGACT  321

Query  515  ATAAACGTGTTTTTGAACATTCTCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGG  574
            ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct  322  ATAAACGTGTTCTTGAATATTCTGGATTCTGATTTTCGTCCGAGTAAGTTCATGTATGGG  381

Query  575  AAAGCAATTCAAGCTGCTGTGAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAC  634
            ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| 
Sbjct  382  AAAGCAATTCAAGCTACCGTCAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAT  441

Query  635  CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGA  694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  442  CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGG  501

Query  695  TTGTGTAAAGGGA-AAAGGATGAATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG  753
            || ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  502  TTATGTAAAGTGAGAAAG-ATGAAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG  560

Query  754  AAGATTGTTACCTTCTTTGA  773
            ||||||||| | ||||||||
Sbjct  561  AAGATTGTTGC-TTCTTTGA  579


 Score =  241 bits (130),  Expect = 3e-62
 Identities = 163/178 (92%), Gaps = 6/178 (3%)
 Strand=Plus/Plus

Query  26   ATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCACCGTCAAGTTCACT  85
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGACTCGCTTAAGACTCGTTTCGAAATCTTCTCGTTACGCCACCGTCAAGTTCACT  60

Query  86   GACTCTGTCTCAGCAT---GCTCATGTCGTCGTCTCTTCTCTGCCTCCACCGACCCCGAA  142
            || |||||||||||||   |||||||||||| ||| | ||| ||||||||||||||| ||
Sbjct  61   GAGTCTGTCTCAGCATCATGCTCATGTCGTC-TCT-T-CTCAGCCTCCACCGACCCCAAA  117

Query  143  CCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCGGAGACGAAAAGC  200
             ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| |||
Sbjct  118  TCCGAATCTCAACCCGCACAAGCTCCGCCTACGAATGCCGTCACCGGAGACGAAGAGC  175



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 102538939540


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5