BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12110.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940697 jgi|Araly1|940697|scaffold_601241.1 1002 0.0
Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1 497 5e-140
> Ahg940697 jgi|Araly1|940697|scaffold_601241.1
Length=736
Score = 1002 bits (542), Expect = 0.0
Identities = 658/710 (93%), Gaps = 23/710 (3%)
Strand=Plus/Plus
Query 10 GCATCAATGGCGGTTACATTTTCTGATCTCCACACAGAGCGAGGTCTCAAAACCCTCGAG 69
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 15 GCATCAATGGCGGTTACATTTTCTGATCTGCACACAGAGCAAGGTCTCAAAACCCTCGAG 74
Query 70 GAACATCTCGCCGGTAAAACGTACATCTCCGGCGATCAGCTTTCGGTT-GATGATGTGAA 128
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 75 GAACATCTCGCCGGAAAAACCTACATCTCCGGCGATCAGCTTTC-ATTGGATGATGTGAA 133
Query 129 GGTTTACGCTGCCGTATTGGAGAATCCAGGTGATGGTTTTCCCAATGCTAGCAAGTGGTA 188
|||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 134 GGTTTACGCTGCCGTATTGGAGAAGCCAGGCGATGGCTTCCCCAATGCTAGCAAGTGGTA 193
Query 189 CGATTCTGTTGCTTCTCACCTAGCTAAAAGTTTTCCCGGGAAAGCAGACGGAGTGAGAGT 248
|||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 194 CGATTCCGTTGCTTCTCACCTCGCTAAAAGTTTTCCCGGGAAAGCCGTCGGAGTGAGAGT 253
Query 249 TGGTGGTGGTGTTGCTCCTCCATCTGAAGCTCATCCACATACTGAGG-AAC--CTGCTGC 305
|||||||||||||| |||||||||||| | ||| || ||||||| | | |||||||
Sbjct 254 TGGTGGTGGTGTTG---CTCCATCTGAAG--C-TCCGCAGACTGAGGCACCTGCTGCTGC 307
Query 306 t-ga--t---ggtga---tg--g-tgatgatgatgatgatattgatcttttcgctgatga 353
| || | ||||| || | ||||||||||||||||||||||||||| ||||||||
Sbjct 308 TGGAGCTGACGGTGATGTTGATGATGATGATGATGATGATATTGATCTTTTTGCTGATGA 367
Query 354 gactgaagatgagaaaaaagctgctgaagagagagaagctgctaagaaagatactaagaa 413
||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 368 GACTGAAGATGAGAAAAAAGCTGCTGAGGAGAGAGAAGCTTCTAAGAAGGATACTAAGAA 427
Query 414 gactaaagagagTGGAAAATCTTCTGTGCTACTGGAAGTAAAACCATGGGATGATGAAAC 473
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 428 GACTAAAGAGAGTGGAAAATCTTCTGTGCTACTGGAAGTAAAGCCATGGGATGATGAAAC 487
Query 474 CGACATGAAGAAGTTAGAAGAAGCTGTTCGTAGTGTTCAGATGCCAGGTCTTACATGGGG 533
||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 488 CGATATGAAGAAGTTGGAAGAAGCTGTTCGTAGTGTTCAGATGCCGGGTCTTTCATGGGG 547
Query 534 AGCTTCGAAATTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATGACAAT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AGCTTCGAAATTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATGACAAT 607
Query 594 TGTTGATGACCTTGTGTCTGTGGACAACCTCATTGAAGACCATCTCACCTCAGAGCCTAA 653
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 608 TGTTGACGACCTTGTGTCTGTGGACAATCTCATTGAAGACCATCTCACCTCAGAGCCTAA 667
Query 654 CAACGAGTACATCCAAAGTGTCGATATTGTCGCTTTTAACAAGATTTAGA 703
|||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 668 CAACGAGTACATCCAAAGTGTCGACATTGTTGCTTTTAACAAGATTTAGA 717
> Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1
Length=936
Score = 497 bits (269), Expect = 5e-140
Identities = 573/714 (80%), Gaps = 44/714 (6%)
Strand=Plus/Plus
Query 6 AGCTGCATCAATGGCGGTTACATTTTCTGATCTCCACACAGAGCGA-GGTCTCAAAACCC 64
||| ||| ||||||| ||||| ||||| ||||| ||||||||| || ||| ||||| ||
Sbjct 56 AGCAGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAG-GAGGGTGTCAAATCCG 114
Query 65 TCGAGGAACATCTCGCCGGTAAAACGTACATCTCCGGCGATCAGCTT-TCGGTTGATGAT 123
| ||||| || |||||||| ||||| ||||||||||| ||||| || || || ||||||
Sbjct 115 TGGAGGAGCACCTCGCCGGAAAAACCTACATCTCCGGAGATCA-ATTGTCTGTGGATGAT 173
Query 124 GTGAAGGTTTACGCTGCCG-T--ATTGGAGAATCCAGGTGATGGTTTTCCC-AATGCTAG 179
|| |||||||||||||| | | | | || || ||| | ||| | |||||| ||||||||
Sbjct 174 GTTAAGGTTTACGCTGCTGTTCCAGT-GA-AACCCA-GCGAT-GCTTTCCCTAATGCTAG 229
Query 180 CAAGTGGTACGATTCTGTTGCTTCTCACCTAGCTAAAAGTTTTCCCGGGAAA-GCAGACG 238
|||||||||| | | ||| ||||| || || |||||||| |||||| ||||| || | |
Sbjct 230 CAAGTGGTACCAGTGTGTGGCTTCCCATCTTGCTAAAAG-TTTCCCTGGAAAGGCCGTTG 288
Query 239 GAGTG-AGAGTTGGTGG-TGGTGTTGCTCCTCCATCTGAAGCTCATCCACATACTGAGGA 296
||||| | | | ||||| | || |||| |||| || |||| | | ||||||
Sbjct 289 GAGTGCA-AATCGGTGGCT-CTGCTGCTGCTCC-TC--CAGCT-GT--GGAGGCTGAGGC 340
Query 297 ACCTGCTGCtgatggtgatggtgatgatgatgatgatattgatct-tttcgctgatgaga 355
|||| | || | | | | ||||||||||||||| |||||||| ||| | ||||||||
Sbjct 341 ACCTACAGC---T-G-CA-GCTGATGATGATGATGACATTGATCTGTTT-GGTGATGAGA 393
Query 356 ctgaagatgagaaa-aaagctgctgaagagagagaagctgctaagaaagatactaagaag 414
|||| || || ||| |||||||| || ||||| || ||||||||||| || || ||||||
Sbjct 394 CTGAGGAGGA-AAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAGAAGGACACCAAGAAG 452
Query 415 actaaagagagTGGAAAATCTTCTGTGC-TACTGGAAGTAAAACCATGGGATGATGAAAC 473
|||||||||||||||| || ||||||| || |||| || || |||||||||||||| ||
Sbjct 453 CCTAAAGAGAGTGGAAAGTCCTCTGTGCTTA-TGGATGTTAAGCCATGGGATGATGAGAC 511
Query 474 CGACATGAAGAAGTTAGAAGAAGCTGTTCGTAG-TGTTCAGA-TGCCAGGTCTTACATGG 531
|||||||||||| | |||| ||||||||| | |||| | | |||| |||||| ||||
Sbjct 512 CGACATGAAGAAACTGGAAGCGGCTGTTCGT-GCTGTTGA-ATTGCCCGGTCTTTTATGG 569
Query 532 GGAGCTTCGAAA-TTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATGAC 590
|||||||| ||| || ||||| |||||||||||||| ||||||||||| || ||| | ||
Sbjct 570 GGAGCTTCAAAACTT-GTACCAGTTGGTTACGGGATCAAGAAACTCACGATTATGCTCAC 628
Query 591 AATTGTTGATGACCTTGTGTCTGTGGACAACCTCATTGAAGACCATCTCACCTCAGAGCC 650
|||||||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 629 GATTGTTGATGACCTCGTGTCCCCAGACAACCTCATTGAAGACTTTCTCACCTCAGAGCC 688
Query 651 TAACAACGAGTACATCCAAAGT-GTCGATATTGTCGCTTTTAACAAGATTTAGA 703
|||||||||||||||||| ||| || || |||||||| || |||||||||||||
Sbjct 689 TAACAACGAGTACATCCAGAGTTGT-GACATTGTCGCATTCAACAAGATTTAGA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5