BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12120.1 Length=2154 Score E Sequences producing significant alignments: (Bits) Value Ahg488055 jgi|Araly1|488055|fgenesh2_kg.6__1189__AT5G12120.1 3243 0.0 > Ahg488055 jgi|Araly1|488055|fgenesh2_kg.6__1189__AT5G12120.1 Length=2113 Score = 3243 bits (1756), Expect = 0.0 Identities = 2025/2148 (94%), Gaps = 46/2148 (2%) Strand=Plus/Plus Query 13 AAGCTCTCTCACcttcttcttcttcttcttcttcttctCCGGATCTCGCTTCTCCGTCAA 72 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 AAGCTCTCTCACCTTCTTCTTCTTCTTCTTCCTCTTCTCCGGATCTCGCTTCTCCGTCAA 60 Query 73 CGACTCCGATCAACCTACCAGGATAACTTTG-TGTTGAGAAGATGTCTAGTGCATCCAAG 131 |||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||||| Sbjct 61 CGACTCCGATCAACCTACTAGGATAACTTTGTTG-TGAGAAGATGTCTAGCGCATCCAAG 119 Query 132 ATGAAATCGAGAGACAAGAAGGTCATGAATGATTCACAGAAGACACCTAGTAAAGCGTCT 191 || |||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 120 ATCAAATCGAGAGACAAGAAGGTTATGAATGATTCACAGAAGACACCTAGTAAAGCATCG 179 Query 192 GGATCCATGGGTGGAAGTA---GTGTTGTGGTTGGTGGTTATAATCCACTTTTGGGGACA 248 ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||| Sbjct 180 GGATCCATGGGTGCAAGTACTGGTGTTGTGGTTGGTGCTTACAATCCACTTTTGGGGACA 239 Query 249 TTTCAAACCATTGAGTCGCTTTCAGCAACTGGCTCATCATCTCTTCACAATAATGGCCGG 308 ||||||||| |||||||||||||||||||||| || || |||||||| |||||||||||| Sbjct 240 TTTCAAACCGTTGAGTCGCTTTCAGCAACTGGTTCCTCGTCTCTTCATAATAATGGCCGG 299 Query 309 TTCAGACACATTGATGAGTCGGATTCAACTGGAGCTGACTGTGATTCTGTCTCTAATAAT 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TTCAGACACATTGATGAGTCGGATTCAACTGGAGCTGACTGTGATTCTGTCTCTAATAAT 359 Query 369 GGTAGCTGGTCAGGTGAATCTGAAGATCACAAAGAGAAAGTACCTAGTACTAGTATTGCT 428 ||||||||||| ||||| || |||||||||||||||||||| |||||||| |||| Sbjct 360 GGTAGCTGGTCTGGTGACTCAGAAGATCACAAAGAGAAAGTGCCTAGTAC------TGCT 413 Query 429 GCAAAACAAGAAATCATTCCTGGAGCTGACAATGACAAGCGAGATAAGATGCGTCTGAAG 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 414 GCAAAACAAGAAATCATTCCTGGAGCTGACAATGACAAGCGAGATAAGATGCGGCTGAAG 473 Query 489 AATGAAAGAAAGCATCAGCGTCAAAAGGAAAAGCGAGCTCAGGAGTTGCATGAGCGATGC 548 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 474 AATGAAAGAAAGCACCAACGTCAAAAGGAAAAGCGAGCTCAGGAGTTGCATGAGCGATGC 533 Query 549 TGTCAGTATCTCATGTCGAGAAAACTTGAAGTTCATGCTCAGCTGATTATATCTATGGGG 608 ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| Sbjct 534 TGTCAGTATCTCATGTCGAGAAAACTTGAAGTTCATGCTCAGCAGATTATAGCAATGGGG 593 Query 609 ATTCCTCATGAGCGGGCAACTTATGCTCTTATGTTGAATGAAGGGAAAATAGAGGAATCT 668 ||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 594 ATTGCTCATGAGCGGGCAACTTATGCTCTTATGCTAAATGAAGGGAAAATAGAGGAATCT 653 Query 669 ATTAATTGGCTGTTTGATGATGGTGGGGCAAAAGTAGCAGATAAGAAACTAGATCCGACC 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 654 ATTAATTGGCTGTTTGATGATGGTGGGGCAAAAGTAGCAGATAAGAAACTAGATCCTACC 713 Query 729 TCTGGGAACTTAAAGCTTGACATATCACAAGAGTTGGGTAGAATCTTAGAGTTGGAAACA 788 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 714 TCTGGGAACTTAAAGCTTGACATATCACAAGAGTTGGGTAGAATCTTGGAGTTGGAAACA 773 Query 789 AAATATAAGTGCACCAAGCAGGATGTAGAAAGAGCTGTGGTTACAGCAGAGGGGGACATT 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 AAATATAAGTGCACCAAGCAGGATGTAGAAAGAGCTGTGGTTACAGCAGAGGGGGACATT 833 Query 849 GAGAAAGCAGAAGAAGCATTAAGAAGACAGAAGCAAGACCAATCTACTGCGTCTAGAAAA 908 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 GAGAAAGCAGAAGAAACATTAAGAAGACAGAAGCAAGACCAATCTACTGCGTCTAGAAAA 893 Query 909 CCAGAGGATATTAGTGATAGTACTTCTGTTAACAATAGCAAAGTCCCTTCTGTGCTCACA 968 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 894 GTAGAGGATATTAGTGATAATACTTCTGTTAACAGTAGCAAAGTCCCTTCTGTGCTCACA 953 Query 969 AGTCAGAATACAGTAGGCCAGTTACAACCTAACTCAGGTATGTATCCTGCAGGCAGGGAA 1028 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 954 AGTCAGAATACAGTAGCCCAGTTACAACCTAACTCAGGTATGTATCCTGCAGGCAGTGAA 1013 Query 1029 GAAGCCCTTGACAGAAAGAATCTCGGTTACCCCAGAGGATCCAGCTACATTAGTGGAGAA 1088 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1014 GAAGCCCTTGACAGAAAGAATCTTGGTTACCCCAGAGGATCCAGTTACATTAGTGGAGAA 1073 Query 1089 TCCGAAAACCAAAGTGTAAATTCGTTGGAAAGAATTCACATGAAGTTGCAGTGGATGAAA 1148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 TCCGAAAACCAAAGTGTAAATTCGTTGGAAAGAATTCACATGAAGTTGCAGTGGATGAAA 1133 Query 1149 CTGCAGCAAAATGCCCCCCTTGAAGAGAATAAACGCATACCATATCAACAGACACCACTG 1208 ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1134 CTGCAACAAAATGCCACCCTGGAAGAGAATAAACGCATACCATATCAACAGACACCGCTG 1193 Query 1209 TCTCGATCAACAGAAGAAACACATTATGTGACGGCTCTAGGCGATCAATTCAAGAGGCTT 1268 || ||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||| Sbjct 1194 TCGCGATCAACAGAAGAAACACATTATGTGGCGGCTCAAGGTGATCAATACAAGAGGCTT 1253 Query 1269 CAGCAGCAAGATATGAGGGAACCAGTTATGGTGATGCAGCAGCAGCAGCAACAACAACAA 1328 |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1254 CAGCAGCAAGATATTAGGGAACCAGTTATGGTGATGCAGCAGCAGCA--A-CAACAACAA 1310 Query 1329 CGTTCTCAATCCGCTAACACAAATGTGCTACCTGTCTCTACCATGAATGCATCCTTTACC 1388 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1311 CGTTCTCAATCTGCTAACACAAATGTGCTACCTGTCTCTACCATGAATGCATCCTTCACT 1370 Query 1389 GGAGCAGCAGCAGCAG--G-CAGCGGTTGGCACCCTGCAAATAGATCTGAGGCGGCCCAA 1445 |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| Sbjct 1371 GGAGCAGCAGCAGCAGCAGGCAGCGGTTGGTACCCTGCAAATAGATCTGAGGCGGCCCAA 1430 Query 1446 TCTAACGGATACTTGCCCTCAAGAAGTCTGCCTCCTAATGATCTGAACTCAAACCTGATG 1505 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1431 TCTAACGGATACTTGCCCTCAAGAACTCTGCCTCCTAATGATCTGAACTCAAACCTGATG 1490 Query 1506 TACCAGCAACTTCAGTATCAACAATATCAAGGCCAAGTGAACAACAATGGTCACAGAATG 1565 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1491 TACCAGCAACTTCAGTATCAACAATATCAAGGCCAAGGGAACAACAACGGTCACAGAATG 1550 Query 1566 GCAGGATCTTCTGCTCCGCCTGCTGTGGCTCCAGCTGCTTCTCTTGGGCTCTTCTCGGGG 1625 |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1551 GCAGGAGCTTCTGCACCGCTTGCTGTGGCTCCAGCTGCTTCTCTTGGGCTCTTCTCGGGG 1610 Query 1626 TTTGGATCACTGGCGGGATCATCTTCTTCTGGGCTGGACTGGAACACGGATGGGTCACTG 1685 ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1611 TTTGGTTCGTTGGCGGGATCATCTTCTTCTGGGCTGGACTGGAACGCGGATGGGTCATTG 1670 Query 1686 GGGCATTTGGATTACAACAACATCGACTGGAGTCTAGATAAAGGCCTAGCTTGTGTGAGA 1745 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| Sbjct 1671 GGGCATTTGGATTACAACAACATTGACTGGAGTCTAGATAAAGGCCTGGCTTGTCCGAGA 1730 Query 1746 CCTAGCCAGCAGTATGTGGCAGCATCATCCCCATATAGTGCAGCATCATCCCCGTATGAA 1805 || ||||||||||| ||||||||||||||||||||| | ||| |||| ||||| Sbjct 1731 CCGAGCCAGCAGTACGTGGCAGCATCATCCCCATAT-GA--AGC-TCAT------ATGAA 1780 Query 1806 GCGCACATGAATGGAAGGACAAGAATGAT-GACGAATGGGAATGGGATGGGTGTGGCAAT 1864 || | ||||||||||| || ||||||||||||||||||||| ||||| || Sbjct 1781 -------TG---G-AAGGACAAGAAC-ATTGACGAATGGGAATGGGATGGGCGTGGCGAT 1828 Query 1865 GGGAGTGCAGGAAGCTGCTTTAGTTGGAAATGGGAGAGAGTGGACATCGCCTTTTGAGGG 1924 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1829 GGGAGTGCAGGAAGCTGCTTTAGTGGGAAATGGGAGAGAGTGGACATCGCCTTTTGAGGG 1888 Query 1925 TAAAGATCTGTTTAGTTTGTCTAGACAGTATGTGCCTCCTTCGCTTTAAAGGTGATAAAA 1984 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1889 TAAAGATCTGTTTAGTTTGTCTAGACAGTATGTGCCTCCTTCGCTTTAAAGGTGATAAAA 1948 Query 1985 TGCTCTTCTTCTAGAATAAAGATAAATGAAAGgagagagagagag-G-TGATGGATGATA 2042 ||||||||| |||||||||| |||||||||||||||||||||| | |||||||||||| Sbjct 1949 TGCTCTTCT---AGAATAAAGAAAAATGAAAGGAGAGAGAGAGAGAGATGATGGATGATA 2005 Query 2043 TGAGTTTGTGGTTACTGGTTTTATCAAGTGTTTCTTGCTTGTTTGCTCAAAATGGATCTT 2102 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2006 TGAGTTTGTGGTTACTGGTTTTATCAAGTGTTTCTTGCTTGTTTGCTCAGAATGGATCTT 2065 Query 2103 TCAAATTTCCTTATATTTTATATCCTCCCCACATATTTAACATGGAGC 2150 ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2066 TCAAATTTCCTTATATTTTATATCCTCCC-ACATATTTAACATGGAGC 2112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81056041360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5