BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12130.1 Length=1505 Score E Sequences producing significant alignments: (Bits) Value Ahg940699 jgi|Araly1|940699|scaffold_601243.1 1687 0.0 > Ahg940699 jgi|Araly1|940699|scaffold_601243.1 Length=1168 Score = 1687 bits (913), Expect = 0.0 Identities = 1106/1194 (93%), Gaps = 34/1194 (3%) Strand=Plus/Plus Query 1 GGATTTGACACAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTCTCCCTCC 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 2 GGATTTGACGCAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTTTTGCTCC 61 Query 61 GGCCAAATCGGATCGAATCTTTCTTACCATTCCGGT-GTTCCCGCCGGATTTCAGAGCTC 119 ||| |||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||| Sbjct 62 GGCGAAATCGGATCGAATCTTTCTCACCATTCCGGTAGTT-CCGCCGGATTTCCGAGCTC 120 Query 120 GTGGATGGACTAAGTCTCCTTTCTCTCTCCTTATAAATCCCTCTCTTGCTTCAGCTGCCA 179 ||||||||||| ||||| | | | | | | ||||| | ||||||||| | Sbjct 121 GTGGATGGACTGAGTCT-C---GT-T-T-C-------T--CTCTC--GTTTCAGCTGCGA 162 Query 180 ATCGTCGTCTCTCTCATCTTCCTCCTATCGCGTGTTCCAGAGGTATTGATCAGGAAGATG 239 |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| Sbjct 163 ATCGTCGTCTCTCTCATCTTCCTCCTATTTCTTGCTCCAGAGAAATCGATCAGGAAGAT- 221 Query 240 AAGAGAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATGCAACCACTTCAC 299 || ||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 222 --GATAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATG----CA----A- 270 Query 300 GCTCTTCTTCATCAGTAGATAGTGGAGGCCTGAAAGATTATCAACAAGAAGAAACTTACA 359 ||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||| Sbjct 271 GCTCTTCGTCATCAGTAGATAGTGGAGGCTTGAACGATTATCAACAAGAAGAAACATACA 330 Query 360 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTTGGCACTGCGGTGGCATTTGGAATTGGAA 419 ||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||| Sbjct 331 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTAGGTACTGCGGTGGCTTTTGGAATCGGAA 390 Query 420 TAGGTTTGAAGGAAGGTGTTGGCAAGGCTTCAGAGTTTTTCGCAGGCTACATATTGGAGC 479 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 391 TAGGTTTGAAGGAAGGTGTTGGCAAGGCATCAGAGTTTTTCGCAGGCTATATATTGGAGC 450 Query 480 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 510 Query 540 CACTCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 599 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 511 CACCCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTCTTCCGTT 570 Query 600 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAACCTACTGC 659 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 571 TCACGCTCATATTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAATCTACTGC 630 Query 660 TTGCTGCTGTAC-TCTTATATTCGTCATTCAAGTTATTTGCAAGTGAAGAAGATGATACA 718 |||||||||| | |||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 631 TTGCTGCTGTGCTTCTT-TATTCATCTTTCAAGTTATTTGCAAGTGAAGAAGATGATACA 689 Query 719 GATCTATCGGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 778 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 690 GATCTATCCGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 749 Query 779 TACGATGGAAATCGATTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 838 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 750 TACGATGGAAACCGGTTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 809 Query 839 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCAATACCAGCT 898 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 810 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCGATACCAGCT 869 Query 899 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACTTCTAATCTCTTTGCAATCCTA 958 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 870 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACCTCTAATCTCTTTGCAATCCTA 929 Query 959 GGACTAAGGTCTCTCTATACACTGATTTCTGAAGGAATGGACGAGCTGGAATACTTGCAG 1018 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 930 GGACTAAGGTCTCTCTATACACTTATTTCTGAAGGAATGGACGAGCTAGAATACTTGCAG 989 Query 1019 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGAGTCAAGATGATCCTTGATTTCTTTGGC 1078 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 990 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGATTCAAGATGATCCTTGATTTCTTTGGG 1049 Query 1079 TTCCACATATCAACAGAGGCATCACTTGGTGTCGTTGCACTTTCTCTCAGTACCGGAGTA 1138 |||||| |||| || |||||||||||||||||||| || ||||||||| | || |||||| Sbjct 1050 TTCCACGTATCGACTGAGGCATCACTTGGTGTCGTGGCGCTTTCTCTCGGCACAGGAGTA 1109 Query 1139 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAGCTGA 1192 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1110 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAACTGA 1163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56335472355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5