BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G12140.1

Length=684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488056 jgi|Araly1|488056|fgenesh2_kg.6__1190__AT5G12140.1         813    0.0  


> Ahg488056 jgi|Araly1|488056|fgenesh2_kg.6__1190__AT5G12140.1
Length=545

 Score =  813 bits (440),  Expect = 0.0
 Identities = 515/549 (94%), Gaps = 13/549 (2%)
 Strand=Plus/Plus

Query  83   CGAAAATGGCGGATCAACAAGCAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA  142
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  1    CGAAAATGGCGGATCAACAAGGAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA  60

Query  143  ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA  120

Query  203  ACGAGAACTTGACTCTGGAGTACAAGAGGCTCCTTGGTGCGAAAACACAGGTTGTGGCAG  262
            |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  121  ACGAGAACGTGAGTCTGGAGTACAAGAGGCTCCTTGGTGCAAAAACACAGGTTGTTGCAG  180

Query  263  GAACAATGCACCATCTAACTGTGGAGGTGGCTGATGGTGAGACCAATAAGGTCTATGAGG  322
            |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  181  GAACAATGCACCATCTCACTGTGGAGGTGGCTGATGGTGAGACCAAGAAGGTCTACGAGG  240

Query  323  CCAAGGTTTTGGAGAAAGCTTGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC  382
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCAAGGTTTTGGAGAAAGCATGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC  300

Query  383  ACGATGTTTAATCCGAT-GCCCTGAGCTT-TCT-CTG-CGGCTTGAGTGAGGTCCTTGTG  438
             |||||||||||| ||| ||  ||||||| | | ||| || |||||||||||||||||||
Sbjct  301  GCGATGTTTAATCTGATAGC--TGAGCTTAT-TGCTGTCG-CTTGAGTGAGGTCCTTGTG  356

Query  439  TGCTCTCAGACCACGTGATAAGAGTTCTGGTTTAACCAAGTTAACTTCTTTAATAAGTGA  498
            ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  357  TGCTCTCAGACCACGTGATAAGAGTTCCGGTTTAACCAAGTTAACTTCTTAAATAAGTGA  416

Query  499  A----A-TCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTCTCGTTTG  553
            |    | ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  417  ATGTGAATCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTTTCCTTTG  476

Query  554  TGTATTGCTATTAGCAAACTCTCACTTTTTATCTATCTGCTTTGATTTTACAAAACTTCA  613
            ||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||| |||
Sbjct  477  TGTATTGCTATTATCAAACTCTCACTTTATATCTATCTGCCTTGATTTTACCAAACATCA  536

Query  614  TGATGAAGA  622
            ||| |||||
Sbjct  537  TGACGAAGA  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25123002303


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5