BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12140.1 Length=684 Score E Sequences producing significant alignments: (Bits) Value Ahg488056 jgi|Araly1|488056|fgenesh2_kg.6__1190__AT5G12140.1 813 0.0 > Ahg488056 jgi|Araly1|488056|fgenesh2_kg.6__1190__AT5G12140.1 Length=545 Score = 813 bits (440), Expect = 0.0 Identities = 515/549 (94%), Gaps = 13/549 (2%) Strand=Plus/Plus Query 83 CGAAAATGGCGGATCAACAAGCAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA 142 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 CGAAAATGGCGGATCAACAAGGAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA 60 Query 143 ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA 120 Query 203 ACGAGAACTTGACTCTGGAGTACAAGAGGCTCCTTGGTGCGAAAACACAGGTTGTGGCAG 262 |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 121 ACGAGAACGTGAGTCTGGAGTACAAGAGGCTCCTTGGTGCAAAAACACAGGTTGTTGCAG 180 Query 263 GAACAATGCACCATCTAACTGTGGAGGTGGCTGATGGTGAGACCAATAAGGTCTATGAGG 322 |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct 181 GAACAATGCACCATCTCACTGTGGAGGTGGCTGATGGTGAGACCAAGAAGGTCTACGAGG 240 Query 323 CCAAGGTTTTGGAGAAAGCTTGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC 382 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCAAGGTTTTGGAGAAAGCATGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC 300 Query 383 ACGATGTTTAATCCGAT-GCCCTGAGCTT-TCT-CTG-CGGCTTGAGTGAGGTCCTTGTG 438 |||||||||||| ||| || ||||||| | | ||| || ||||||||||||||||||| Sbjct 301 GCGATGTTTAATCTGATAGC--TGAGCTTAT-TGCTGTCG-CTTGAGTGAGGTCCTTGTG 356 Query 439 TGCTCTCAGACCACGTGATAAGAGTTCTGGTTTAACCAAGTTAACTTCTTTAATAAGTGA 498 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 357 TGCTCTCAGACCACGTGATAAGAGTTCCGGTTTAACCAAGTTAACTTCTTAAATAAGTGA 416 Query 499 A----A-TCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTCTCGTTTG 553 | | ||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 417 ATGTGAATCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTTTCCTTTG 476 Query 554 TGTATTGCTATTAGCAAACTCTCACTTTTTATCTATCTGCTTTGATTTTACAAAACTTCA 613 ||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||| ||| Sbjct 477 TGTATTGCTATTATCAAACTCTCACTTTATATCTATCTGCCTTGATTTTACCAAACATCA 536 Query 614 TGATGAAGA 622 ||| ||||| Sbjct 537 TGACGAAGA 545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25123002303 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5