BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12220.1
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488065 jgi|Araly1|488065|fgenesh2_kg.6__1199__AT5G12220.1 2961 0.0
> Ahg488065 jgi|Araly1|488065|fgenesh2_kg.6__1199__AT5G12220.1
Length=1907
Score = 2961 bits (1603), Expect = 0.0
Identities = 1801/1897 (95%), Gaps = 11/1897 (1%)
Strand=Plus/Plus
Query 32 AAAACCCTAAAAGCTTTCGAGCCGACTCTTCAATGGAGGCGCTAGCGGGAATTGAAGCAG 91
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAAACCCTAAAAGCTTACGA---GACTCATCAATGGAGGCGCTAGCGGGAATTGAAGCAG 57
Query 92 ACATCGAATCGTATTTCGGAGAGCAGGATCAACAGAAATCGTCACCGGACGGCTGCAAAC 151
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 58 ACATCGAATCGTATTTCGGAGAGCAGGATCAACAGAAATCGTCATCGGACGGCTGCAAAC 117
Query 152 AGGTCCCGTGGCTGAGCTGGGAAGAGTGGGACTCTGTGAGAGAGtctctcttctcttctt 211
||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 118 AGGTCCCTTGGCTGAGTTGGGAAGAGTGGGACTCAGTGAGAGAGTCTCTCTTCTCTTCAT 177
Query 212 ctcCGGATAGAATCGCTTCTGCATTGGAAAGGGTTGCAACATGGCGAAGTAGAGGATCTC 271
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 CTCTTGATAGAATCGCTTCTGCATTGGAAAGGGTTGCAACATGGCGAAGTCGAGGATCTC 237
Query 272 TTCCAGCGCCTGTGGATGTTACTTGTTCCCTTATTGAAATTCAACTCAAAGATGGCTTTA 331
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 TTCCAGCACCTGTGGATGTTACTTGTTCCCTTATTGAAATTCAGCTCAAAGATGGCTTTA 297
Query 332 TTCCGAGGGAGAAACAATCAGCAGATGCATTGTATTCAGAGCATTTACTGCAGATGCTAT 391
||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 298 TTCCGAGAGAGGAACAATCAGCAGATGCATTATATTCAGAGCATTTACTGCAGATGCTTT 357
Query 392 ATTGCATGGGAATACTCAGGCTTGTGAACTGTGTCATAGAAAAGACAAGGAGGAGAGAAG 451
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATTGCATGGGTATACTCAGGCTTGTGAACTGTGTCATAGAAAAGACAAGGAGGAGAGAAG 417
Query 452 ACGTTTCAATTGCGGATGCTGCTAGAGCAATCGGTATCCCACGTAAATTAATCGATCTTC 511
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGTTTCAATTGCGGATGCAGCTAGAGCAATCGGTATCCCACGTAAATTAATCGATCTTC 477
Query 512 GTCATGAGGGTTCTCACCGTGAGCTCCCTGCACTCTCGGTGCTTCGGGATGCTGCAGATG 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTCATGAGGGTTCTCACCGTGAGCTCCCTGCACTCTCGGTGCTTCGGGATGCTGCAGATG 537
Query 572 AGGCTCTTGAATGGTTGAAATCGTATTATTGGGAGCAACAAAAGTATCAAATCCCCTTAA 631
|||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||
Sbjct 538 AGGCACTTGAATGGTTGAAATCTTATTATTGGGAGCCACAGAAGTATCAAATTCCCTTAA 597
Query 632 AGAGAGATGGAACAGCTAGCATCAGAAGAGAAGTCAAATCCAAACTCAGGAAACTTGCTT 691
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGAGAGATGGAACGGCTAGCATCAGAAGAGAAGTCAAATCCAAACTCAGGAAACTTGCTT 657
Query 692 TCTCCTTGCAGCTGAAGCGTAATCCTCAATTTGACTCCCCTTTGGTCAAAGAAAAATGTT 751
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 TCTCCTTGCAGCTTAAGCATAATCCTCAATTTGACTCCCCTTTGGTCAAAGAAAACTGTT 717
Query 752 CTAATAAAAGGATAAGGAAGATTGTAAGCAGCCTTGTTGAGTTATACCCTTCTTTCTCCG 811
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 718 CTAATAAAAGGATAAGGAAGATCGTAAGTAGCCTTGTTGAGTTATACCCTTCTTTCTCCG 777
Query 812 CAGAAATTTCATCTGTGCTCCTTGAATTCTTACTCAAGGCCTTGGATTCTTCAAAGTCGA 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CAGAAATTTCATCTGTGCTCCTTGAATTCTTACTCAAGGCCTTGGATTCTTCAAAGTCGA 837
Query 872 CAGATCTTCAGAATAAGGCTGGGCAAGATTTCAG-GGTCTTTCTAG-ATGAATGGAAACC 929
||||||||||||||||| ||||| |||||||||| || ||| |||| | |||||||||||
Sbjct 838 CAGATCTTCAGAATAAGCCTGGGAAAGATTTCAGAGG-CTTCCTAGCA-GAATGGAAACC 895
Query 930 TGTAATAATGGAACTCTCAAATAGAGAACCTGAGTTACTTTTGACTCTACTCAAGGAAGT 989
|||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 896 TGTAATCATGGAGCTCTCAAATAGAGAACCCGAGTTGCTTTTGACTCTACTCAAGGAAGT 955
Query 990 CCTTGATATGATCCAAAATAATGAACGGAGAAGACATGAAACCGAAAAGCCAGTGGAAGA 1049
||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 956 TCTTGATATGATCCAATATAATGAACGGAGAAGATATGAAACCGAAAAGCAAGCGGAAGA 1015
Query 1050 GGTTTCTCAAGTTGAGCAGGTCCCTTTCTTGTTTGCATGGCTTGTGAGTCTTCTCAATGG 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGTTTCTCAAGTTGAGCAGGTCCCTTTCTTGTTTGCATGGCTTGTGAGTCTTCTCAATGG 1075
Query 1110 ATCAAAGCATTTTCAGAGAAACAGTTCTCTAGAAGTGAAACCTCCAAGCATTTTCCTTAT 1169
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 GTCAAAGCATTTTCAAAGAAACAGTTCTGTAGAAGTGAAACCTCCAAGCATTTTCCTTAT 1135
Query 1170 GGAACTTATACGTAGATGTCTTGTCTTGGGAGCCTTAGGATATGAGCTGGTTTTGAAATC 1229
|||||||||||||||||||||| ||||||||||||||||| | |||| |||| |||||||
Sbjct 1136 GGAACTTATACGTAGATGTCTTCTCTTGGGAGCCTTAGGAAACGAGCCGGTTCTGAAATC 1195
Query 1230 AGCATTTCTACTCGCAGAGATTGTGGGAGGCCGTGTCTTAAAGGAGAAGCTCATAAAACT 1289
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 AGCATTCCTACTCGCAGAGATTGTGGGAGGCCGTGTTTTAAAGGAGAAGCTCATAAAACT 1255
Query 1290 TCCTCTTATGCATAAAAGCTCTGCAATTGTTCCATTGAAACAGAGTTCTACTCTTGTAAC 1349
||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1256 CCCTCTCATGCATAAAGGCTCTGCAATTGTTCCATTGGAACAGAGTTCTACTCTTGTAAC 1315
Query 1350 AGCTAGTACAACGCTCCTTGAGCAAGAGAAGAATCTCGGTAATGCAGGCAAGAGACTTGA 1409
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGCTCCTACAACGCTCCTTGAACAAGAGAAGAATCTCGGTAATGCAGGCAAGAGACTTGA 1375
Query 1410 GTTCGTCAAACTTCAACTCTCAAAGAAGAAAGGTATTGACACAGACAAAACCGGTAACAG 1469
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1376 GTTCGTCAAACTTCAACTCTCAAAGAAAAAAGGTATCGACACAGACAAAACCGGTAACAG 1435
Query 1470 ATGGAGAAAGGCAAAAACATGGAGCCCTTGTCCAATTGGTATGTTGCCTCGGATCATTGG 1529
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1436 ATGGAGAAAGGCAAAAACATGGAGCCCTTGCCCAATTGGCATGTTGCCTCGGATCATTGG 1495
Query 1530 ATCTTCTGGACGTTTACCTCTTCTTGACAATCAGAATGCTAAGAGCATCTCAAAACAAGC 1589
|||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 1496 ATCTTCTGGACGTTTACCTCTTCTTGACTATCACAATGCTCAGAGCATCTCAAAACAAGC 1555
Query 1590 ACAAGGTAACAACAATGCGAAGAGAGGAGCTGAGTGTAATAGAAATCAATTGGAGAAATC 1649
|||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1556 ACAAGGTAACAACAATGCCAAGAGAGGAACTGAGTGTAATAGAAAGCAATTGGAGAAATC 1615
Query 1650 GCCATGCAAGCGAGCAAGGAAGAGTGCAGGAGATTCTGA-ATCAAATGATGTGACATTGG 1708
|||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 1616 ACCATGCAAGCGAGCAAGGAAGAGTGCAGAAGATTCTGACA-CAAATGATGTGACATTGG 1674
Query 1709 AATCATACGAGGAAGAAGCTGAGATGGAAATAGAACATGCATATGAGGAAACTGAAACTG 1768
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1675 AAGCATACGAGGAAGAAGCTGAGATGGAAATAGAACATGCATATGAGGAAACTGAAGCTG 1734
Query 1769 TAGCAGAAGAGAATCTGATGTGGAATGATGAAGAGGAAAGTAGAAGCTGCCTTATGATAG 1828
||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 1735 TAGCAGAAGAGAATCTGATGTGGAATGATAAAGAGGAAAGCAGAAGCTGTCTTATGATAG 1794
Query 1829 ATGGTGAATGGAAAAGAGTAAATGATGGAGAACTCTCGGGGATGGCTTCTAGTGTTACAA 1888
||||||||||||||||||| ||||| |||||||| |||||||||||||| | ||||||
Sbjct 1795 ATGGTGAATGGAAAAGAGTCAATGAAGGAGAACTATCGGGGATGGCTTCGAAAATTACAA 1854
Query 1889 TTTGTGTTTGAGATTTC-GACAGATGTAATCATATAA 1924
||||||| ||||||||| | ||||||||| |||||||
Sbjct 1855 TTTGTGTCTGAGATTTCTG-CAGATGTAACCATATAA 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5