BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12440.1
Length=2573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325766 jgi|Araly1|325766|fgenesh1_pm.C_scaffold_6000986 2983 0.0
> Ahg325766 jgi|Araly1|325766|fgenesh1_pm.C_scaffold_6000986
Length=1956
Score = 2983 bits (1615), Expect = 0.0
Identities = 1849/1962 (94%), Gaps = 15/1962 (1%)
Strand=Plus/Plus
Query 192 ATGGATTCCGGTGACGCGACATCTTTGCTTTTGACGAAAATTCGAAGCTTGGAGCCAGAT 251
||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||
Sbjct 1 ATGGATTCCGGTGACGCGACAGCTTTGCTTTTGGCGAAAATCCGAAGCTTGGAGCCAGAT 60
Query 252 TATGCTCCTAAGATTATTGGGTATTTGCTTTTACATGATTTTGGTGATAGAGACTTGATG 311
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TATGCTCCGAAGATTATTGGGTATTTGCTTTTACAGGATTTTGGTGATAGAGACTTGATG 120
Query 312 CATCTGGCTCGTGGACCTGAATCGATTTTGCAGTCGACTATTTCGAAAGTGAAGAGTC-T 370
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 121 CATCTGGCTCGTGGACCTGAATCGATTTTGCAGTCGATTATTTCGAAAGTGAAGAGTCAT 180
Query 371 CTTGGGGATTTTCTCCAACAACTCGCCTTCTTCTACTCCGACGTCTCCTTCTCCGTTGAA 430
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 -TTGGGAATTTTCTCGAACAACTCGCCTTCTTCTACTCCGACGTCTCCTTCTCCGTTGAA 239
Query 431 TCCTATCTGTCGTCCTCCTCTTAACGGAAGAGGAAGCTCTCACTCCAATGGGTTTATGGA 490
||||||| ||| || ||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 240 CCCTATCTCTCGACCACCTATTAACGGTAGAGGAAGCTCTCACTCTAATGGGTTTATGGA 299
Query 491 TTTCCGTAGAAACTCTCCGTCTTCTCCTTCTTCTACCTCTCCTTGGTCATTCAACAACTG 550
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TTTCCGTAGAAACTCTCCATCTTCTCCTTCTTCTACCTCTCCTTGGTCACTCAACAACTC 359
Query 551 TATCAACGGTAATAATGGGAATAACCCCCACATTTCCCCTAAACACACTCCGATCTCGAA 610
||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TATGAACCCTATTAATGGGAATAACCCCCACATTTCCCCCAAACACACTCCGATCTCGAA 419
Query 611 ACCCTTTAGCTCTCACCAAAGCAATGGACTTTCTGCTACACATTCTGGTAGTGCTGACGC 670
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 420 ACCCTTTAGCTCTCACCAAAGCAATGGAGTTTCTGCTACAGATTCTGGTAGTGCTGACGC 479
Query 671 TGCTGGTGGTGCTGATTTACTTGATGATCAGCAGCTTAATGATTGCCTTTCGTTTCTCGA 730
|| |||| |||||||||||| ||||| |||||||||||||||| |||||| ||||||||
Sbjct 480 TGGTGGTAATGCTGATTTACTGGATGACCAGCAGCTTAATGATTACCTTTCTTTTCTCGA 539
Query 731 CGATTCTTGTTCTAAAACCGAGGATCTTGTGGATCCTAGCATTCCTTTGGATTACTCTGT 790
|||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 540 CGATTCCTGTTCAAAAACCGAGGATCTTGTGGATCCTAGGATTCCTTTGGACTACTCTGT 599
Query 791 AGATGGTGATGGTGAAACCCATCTGCACAGGAGGAGTTTCTCTTG-TGATGCGTCTTTTG 849
||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 600 AGA---CGATGGAGAAACCCATCTGCACAGGAGGAGTTTCTC-GGCAGATGCGTCTTTTG 655
Query 850 TGTCCGGAGATGATGGATTTGGTGGTGGATGCAAACCATGTGTGTATTTTAGTAGAGGTT 909
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 656 GGTCCGGAGATGATGGATTTGGTTCTGGATGCAAACCATGTGTGTATTTTAGTCGAGGTT 715
Query 910 TGTGCAAGAATGGAGAAAGCTGCAAGTTTATCCACGGTGGATATCCGGATAATATGGATG 969
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 716 TGTGCAAGAACGGAGAAAGCTGCAAGTTTATCCACGGCGGATATCCGGAGAATATGGATG 775
Query 970 GTAATGGCATTGTCGCTGACTCGCCTAGGAAAATGGAGAACTTTGTTAGGCAGCACGAGG 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 GTAATGGCATTGTCGCTGACTCGCCTAGGAAAATGGAGAACTTTGTTAGGCAGCACCAGG 835
Query 1030 AGATGATGAGGCTGAAATTGGCTTACCAGCAGCAGAGGTTGGCTTCTCAAATCCTGGGTC 1089
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 836 AGATGATGAGGTTGAAATTGGCTTACCAGCAGCAGAGGCTGACTTCTCAAATCCTGGGTA 895
Query 1090 GGGCTCCCCAGTTGCCATACGAGAAAAGAATGGACTTTCTCTTGCAGCAGCATGCTCAAA 1149
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 896 GGGCTCCCCAGTTGCCATACGAGAAAAGAATGGATTTTCTCTTGCAGCAGCACGCTCAAA 955
Query 1150 GAGATGGTGGACTGCCTTTTGGTGATGAAAGATTTTGGAGCAGCAGCCCAGGACGGCTTG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GAGATGGTGGACTGCCTTTTGGTGATGAAAGATTTTGGAGCAGCAGCCCAGGACGGCTTG 1015
Query 1210 AGAGGATGGAGCT---GGCAATGCATTTAGGTGATCAGTCAAATTCGGCATCTAGACAGA 1266
|||||||||| || ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1016 AGAGGATGGAACTAATGGCAATGCATTTAGGTGATCAGTCAAACTCCGCATCTAGACAGA 1075
Query 1267 TTTACTTGACATTCCCAGCTGACAGCACGTTTAAGGATGAGGATGTTGCTACATATTTCA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTTACTTGACATTCCCAGCTGACAGCACGTTTAAGGATGAGGATGTTGCTACATATTTCA 1135
Query 1327 GCCTCTTTGGAACAGTCCAAGATGTGCGGATCCCATACCAACAGAAGCGTATGTTTGGCT 1386
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1136 GCCTTTTTGGAACAGTGCAAGATGTGCGGATCCCATACCAGCAGAAGCGTATGTTTGGCT 1195
Query 1387 TTGTTTCATTTGCTCATCCCGAGACAGTGAAAGTTGTACTAGCTAGAGGGAATCCCCATT 1446
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTGTTTCATTTGCTCATCCTGAGACAGTGAAAGTTGTACTAGCTAGAGGGAATCCCCATT 1255
Query 1447 TCATTTGCGACTCACGGGTTCTTGTCAAACCTTACAAAGAAAAAGGCAAAGTCTTGGACA 1506
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCATTTGCGACTCACGGGTGCTTGTCAAACCTTACAAAGAAAAAGGCAAAGTCTTGGACA 1315
Query 1507 AGAAGCAACAGCAACTGCTACAACAGCAGATTGAGCGAGGAAATTACTCCCCGTGCTCCA 1566
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1316 AGAAGCAACAGCAACTGCTGCAACAGCAGATTGAGCGGGGAAATTACTCCCCGTGCTCCA 1375
Query 1567 GTCCATCTGGGATTGATCCTAGAGAACAGTCTGATTTCCACCTTG--G-TTCAAAGATGT 1623
|||| |||||| ||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1376 GTCCTTCTGGGGTTGATCCTAGAGAACAGTCTGATTTCCACCTTGTAGGTTCGAAGATGC 1435
Query 1624 TGTATGAGAGACGTGAGATGATGAGAAGGAAAATAGAGCAGGCTGATCTCCTGAGGGCTA 1683
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1436 TGTATGAGAGACGTGAGATGATGAGAAGGAAAATGGAGCAGGCTGATCTCCTGAGGGCTA 1495
Query 1684 TTGAACTCGAAAGAAGACGTTTCATTAATTTACAGCTTCCTGAGTTCAAGAATAGTGTAA 1743
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1496 TTGAACTCGAAAGAAGACGTTTCATAAATTTGCAGCTTCCTGAGTTCAAGAATAGTGTAA 1555
Query 1744 CGCTGAATCATCACCGTAGCTTTTCTGTGGGGTCTCCTGGTTATTTTTCATCTGCCGGCA 1803
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1556 TGCAGAATCATCACCGTAGCTTTTCTGTGGGGTCTCCTGGTTATTTTTCGTCTGCCAGCA 1615
Query 1804 ATCAAAGCCCTGATTTTCAATCTGAACTTAACGGT-GCAGATGCTTTAAAAGTAACTGAT 1862
| |||||||||||||||||||||||||||| | || |||||||||||| ||||| ||||
Sbjct 1616 ACCAAAGCCCTGATTTTCAATCTGAACTTA-CAGTTGCAGATGCTTTAGAAGTAGTTGAT 1674
Query 1863 GATACCTTGGAGCTGCATCCTTACCCAGTAGTCAACCCAATGAGTGTTAACAATAGCTAC 1922
||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 1675 GATACCTCGGAGCTGCATCCTTACCCTGTAATCAACCCAATGAGTGTTAACAATAATTAC 1734
Query 1923 TCAAACGGTGCAAAAGAAGAGACTAACAAGAGTGAATTGCTTGATCCCGATTCTGGAAGC 1982
||||||||||||||||||| |||| ||||||||||||||||||| |||||| | ||||||
Sbjct 1735 TCAAACGGTGCAAAAGAAGGGACTGACAAGAGTGAATTGCTTGAACCCGATACGGGAAGC 1794
Query 1983 ACCATTGAGCTTGTTCTTCCTAGTAACCTCTTCCCTTCTGCATCATCTACCGATGATCAC 2042
|| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1795 ACTATAGAGCTTGTTCTTCCCAGTAACCTGTTCCCTTCTGCATCATCTACCGATGATCAC 1854
Query 2043 AAAACCGATGATTCTGCTGAAACTAATGCAAAAGTTGGAGTCTCCTCTACTAATGAAAAT 2102
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1855 AAAACCGATGATTCTGCTGCAACTAATGCAAAAGTTGGAGTCTCCTGTACTAATGGAAAT 1914
Query 2103 GACCATGAACCACCAGTCACTACCAATAATCTGATGCAGTAG 2144
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GACAATGAACCACCAGTCACTACCAATAATCTGATGCAGTAG 1956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97015854015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5