BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12470.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940741 jgi|Araly1|940741|scaffold_601285.1 1906 0.0
> Ahg940741 jgi|Araly1|940741|scaffold_601285.1
Length=1205
Score = 1906 bits (1032), Expect = 0.0
Identities = 1148/1203 (95%), Gaps = 11/1203 (1%)
Strand=Plus/Plus
Query 135 TCTGTAGCATCAATGGCAATCGCTTCCTGCTTCTTCTGTGTTCCAACACCGAACACAGCT 194
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 12 TCTGTAGCATCAATGGCAATCGCTTCATGCTTCTTCTGTGTTCCAACACCCAACACATCT 71
Query 195 ATCTCTGAATCCAATCTGACATGGCCTCACATCGCTTCGTTTCCTAGACTCTCTTCATCT 254
||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 72 ATCTCTGAATCCAATCTCACATGGCCTCACCTTGCTTCGTTTCCTAGACTCTCTTCCTCT 131
Query 255 TCCTCTTTTAACGGTGTAATCTCTGCAAAGTCAATCTCTTTTAACCGCCGTGTACCTATT 314
|||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||
Sbjct 132 TCCTCTTTTAACGGTGTAATCTCTGCAAAGTCCATCTCTTTCAACCGCCGCGTTCCTATT 191
Query 315 ACCCCTGTTTTATCCGCTTCAAGTGGTAACGGCGGCTCTGATAACAACGGAGGAGGTCTT 374
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |
Sbjct 192 ACCCCTGTTTTATCCGCTTCGATTGATAACGGCGGCTCTGATAACAACGGAGGAGGTC-T 250
Query 375 AgtggtggtggtggtggtggCGATGGAGGTAAGAATGATGGAGATGGACACGGTGACGAG 434
|||||||||||| | |||||||||||| || |||||||||||||| ||||||||||||
Sbjct 251 --TGGTGGTGGTGGCGATGGCGATGGAGGCAAAAATGATGGAGATGGGCACGGTGACGAG 308
Query 435 GACAGGGATAGGAACAGGAACGAGGCGATGCTTTTGTTGAAGGAGTCTGGGATTGAATTG 494
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 309 GACAGGGATAGGAACAGGAACGAGGCGATGCTTTTGTTGAAGGAGTCTGGGACTGGATTG 368
Query 495 GAGAGTCTTCCCAAAGATCTAGCGGCTGCTATTGAGGCGGGTCGGATTCCTGGATCGGTT 554
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 369 GAGAGTCTTCCCAAGGATCTAGCGGCTGCTATTGAGTCGGGTCGGATTCCTGGATCGGTT 428
Query 555 ATCACTCGGTTCCTGGAGCTTCAGAAATCGGCTGTGATGCGGTGGCTGATGCAGTTTGGT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATCACTCGGTTCCTGGAGCTTCAGAAATCGGCTGTGATGCGGTGGCTGATGCAGTTTGGT 488
Query 615 GGGTTTAGGGAAAGATTGTTGGCTGATGATCTCTTCATGGCTAAACTCGCCATGGAATGT 674
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 489 GGGTTTAGAGAAAGATTGTTGGCTGATGATCTCTTCATGGCTAAACTTGCCATGGAATGT 548
Query 675 GGTGTTGGAATCTTCACCAAGACTGCTGCTGAGTATGAACGGCGTAGAGAAAACTTCTTC 734
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GGTGTCGGAATCTTCACCAAGACTGCTGCTGAGTATGAACGGCGTAGAGAAAACTTCTTC 608
Query 735 AATGAACTTGAAGTTGTCTTTGCCGATGTGGCGATGGCTATTATTGCTGATTTCATGTTG 794
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AATGAACTTGAAGTCGTCTTTGCCGATGTGGCGATGGCTATTATTGCTGATTTCATGTTA 668
Query 795 GTTTATCTTCCTGCTCCTACCGTTTCTCTTCGACCACCTCTCGCACTTACTGCTGGAGGT 854
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 669 GTTTATCTTCCTGCTCCTACCGTATCTCTTCGACCACCTCTTGCACTTACTGCTGGAGGT 728
Query 855 ATATCCAAGTTTTTCCACAACTGCCCAGACAATGCCTTCCAGGTTGCTCTCTCCGGAACC 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ATATCCAAGTTTTTCCACAACTGCCCAGACAATGCCTTCCAGGTTGCTCTCTCCGGAACC 788
Query 915 TCATATACTCTCTTGCAAAGGCTAGGTGCTATAACGCGCAATGGAGCTAAGCTGTTTGCC 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TCATATACTCTCTTGCAAAGGCTAGGTGCTATAACGCGCAATGGAGCTAAGCTGTTTGCC 848
Query 975 GTTGGCACCACATCATCGCTGGTTGGTACTGCTATTACAAATGCATTCATAAAAGCACGA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GTTGGCACCACATCATCGCTGGTTGGTACTGCTATTACAAATGCATTCATAAAAGCACGA 908
Query 1035 AAAGCTGTGGACCAGAATTCTGAAGGTGAAGTCGAAACTGTTCCGATAGTCTCCACAAGT 1094
|||||| ||||||| ||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 909 CGAGCTGTAGACCAGACTTCTGAAAGTGAAGTTGAAACTGTTCCGATCGTCTCCACAAGT 968
Query 1095 GTTGCATATGGTGTCTACATGGCAGTTTCTAGCAACCTAAGGTACCAAATAGTGGCTGGT 1154
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 969 GTTGCATATGGTGTCTATATGGCAGTTTCTAGCAACCTAAGGTACCAAATAGTGGCAGGT 1028
Query 1155 GTGATTGAACAACGTCTCCTGGAGCCAATGCTACACCAACACAAACTTGCACTCAGTGCG 1214
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1029 GTAATTGAACAACGTCTCCTGGAGCCAATGCTACACCAACACAAACTTGCACTGAGTGCG 1088
Query 1215 TTGTGCTTT-GCAGTTAGAACAGGCAACACATTCTTGGGTTCCTTATTATGGGTGGATTA 1273
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TTGTG-TTTCGCAGTTAGAACAGGCAACACATTCTTGGGTTCCTTATTATGGGTGGATTA 1147
Query 1274 TGCCCGCCTCATTGGTATCCAGAAATCTCACTGATGAAGCGGAATAAGAACCGGATGTGC 1333
|||||||||||| ||||||||||||||||| ||| ||||| | |||||||||||||
Sbjct 1148 TGCCCGCCTCATCGGTATCCAGAAATCTCATTGAAGAAGC--A----GAACCGGATGTGC 1201
Query 1334 CCG 1336
|||
Sbjct 1202 CCG 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5