BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12840.1 Length=1275 Score E Sequences producing significant alignments: (Bits) Value Ahg893182 jgi|Araly1|893182|Al_scaffold_0006_1178 1230 0.0 > Ahg893182 jgi|Araly1|893182|Al_scaffold_0006_1178 Length=813 Score = 1230 bits (666), Expect = 0.0 Identities = 772/822 (94%), Gaps = 12/822 (1%) Strand=Plus/Plus Query 150 ATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAG 209 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGCAATCGAAACCGGGAAGAGAAAACGAAGAGGAAGTC---AATCACCATGCTGTTCAG 57 Query 210 CAGCCGATGATGTAT---GCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCT 266 || |||||||||||| ||||| ||||||||||||| ||||||||||||||| || ||| Sbjct 58 CAACCGATGATGTATCCAGCAGATCCCTGGTGGAAAATCAACTCCTTTGGTGTAGTTCCT 117 Query 267 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCC 326 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 118 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCGAATGGTTCC 177 Query 327 GAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGC 386 || ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct 178 GAATCAAACGATGTTCATTCAGCATCTGAAGATGGTGCGTTGAATGGTGAAAATGACGGC 237 Query 387 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAA 446 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 238 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCATGGAATGGAA 297 Query 447 GGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCA 506 || |||||||| || || ||||| ||||| ||||||||||||| |||||||||||||||| Sbjct 298 GGGAATGACCCGGCACTTTCTATTCGTAATATGCATGATCAGCAACTTGTACAACCACCA 357 Query 507 GAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGG 566 |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 358 GAGCTTGTTGGACATTATATCGCTTGTGTCCCAAATCCATATCAGGATCCATATTATGGC 417 Query 567 GGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCT 626 ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 418 GGAATGATGGGAGCATATGGTCATCAGCCATTGGGTTTTCGACCATATCTTGGAATGCCT 477 Query 627 CGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAG 686 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 478 CGTGAAAGAACAGCTCTGCCACTTGACATGACACAAGAGCCCGTTTATGTGAATGCAAAA 537 Query 687 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAA 746 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 538 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGTTAGAAAGGAAA 597 Query 747 GTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGG 806 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 598 GTCATCAGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCGATGAGAAGG 657 Query 807 GCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCA 866 |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct 658 GCACGAGCTAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTGGAAGCAGGAGAGGGTGCA 717 Query 867 GGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAG 926 ||| || || ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 718 GGA---AG-GA--GAGAAAGGGGTTCAGCAACGAACTCATCAGGCTCTGAACAAGTTGAG 771 Query 927 ACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAA 968 |||||||||||||||||||||||||| || |||||||||||| Sbjct 772 ACAGACTCTAATGAGACCCTGAATTCGTCAGGTGCACCATAA 813 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47653646250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5