BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12860.1 Length=1946 Score E Sequences producing significant alignments: (Bits) Value Ahg940745 jgi|Araly1|940745|scaffold_601289.1 2867 0.0 > Ahg940745 jgi|Araly1|940745|scaffold_601289.1 Length=1816 Score = 2867 bits (1552), Expect = 0.0 Identities = 1746/1836 (95%), Gaps = 27/1836 (1%) Strand=Plus/Plus Query 12 tcgccgacgacgctacaaccatggcgtctctcgctctctccggctcctgctctctcgctt 71 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCGCCGACGACGCTACAACAATGGCGTCTCTCGCTCTCTCCGGCTCCTGCTCTCTCGCTT 60 Query 72 tccctctcaaatctcgatctctctctctccctcgtcctccttcttcctctctcaatttga 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCCCTCTCAAATCTCGATCTCTCTCTCTCCCTCGTCCTCCTTCTTCCTCTCTCAATTTGA 120 Query 132 cgaaacctctccgatctctcgattctcGCTTCTCCTTACTCAAATCTCCACTTCCCG--T 189 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 121 CGAAACCTCTCCGATCTCTCGACTCTCGCTTCTCCTTACTCAAATCTCCACTTCCCGCCG 180 Query 190 C-TCT-TTACGCCGGAGATCATCAACTCTCGTTAAAGCCTCTTCCACCGTCGCTTCAGCT 247 | ||| ||| |||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct 181 CTTCTCTTA-ACCGGAGATCATCAACTCTCGTTAAAGCCTCTT---CCGCCGC-T--GCT 233 Query 248 TCCT-CTTCTCCAACTCCTCCTTTGGTTCCAGCTCCGGTTCCATGGCAAGGAGCTGCCAT 306 | || | ||| | || | || || | ||||||||| ||||||||||||||||||||||| Sbjct 234 T-CTCCGTCT-C--CT-C-CCGTT-GCTCCAGCTCCCGTTCCATGGCAAGGAGCTGCCAT 286 Query 307 TAAGCCTCTTCTCGCTTCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCAGTCCCCGA 366 |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 287 TAAGCCTCTTATCGCATCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCTGTCCCCGA 346 Query 367 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 406 Query 427 CATCACTCAGCCGCTTCCTCTCGGTGCTGTTGCTCTAATGGGATTAGGAGCTTCCGTTCT 486 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 407 CATCACTCAGCCGCTTCCTCTCGGCGCTGTTGCTCTATTGGGATTAGGAGCTTCCGTTCT 466 Query 487 CACCAAAACCCTAACGTTCGCCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 546 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 467 CACCAAAACCCTAACGTTCACCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 526 Query 547 CATCGCTCTTGCCTTCTTCTTCGCTCGCGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 606 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 527 CATCGCTCTCGCCTTCTTCTTCGCTCGTGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 586 Query 607 AGCTTACCAGTTCGTTAGACTCTTCGGTAGCTCCTCCCTTGGTCTCGGTTACAGTCTCGT 666 |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct 587 AGCTTACCAGTTCGTTAGACTCTTTGGTAGCTCCTCGCTTGGGCTTGGTTACAGTCTCGT 646 Query 667 CTTCAGTGAAGCTCTTTTAGCTCCGGCGATTCCTTCTGTCTCGGCTCGTGCCGGTGGAAT 726 |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 647 CTTCAGTGAAGCACTCTTAGCTCCGGCGATTCCTTCAGTCTCGGCTCGTGCCGGTGGAAT 706 Query 727 CTTTCTCCCGTTGGTGAAATCTCTCTGTGTTGCTTGTGGGAGTAACGTTGGGGATGGAAC 786 ||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||| Sbjct 707 CTTTCTCCCGTTGGTTAAATCTCTCTGTGTCGCTTGTGGTAGCAACGTTGGGGATGGAAC 766 Query 787 AGAGCACCGTCTTGGCTCGTGGTTGATGCTTACTTGTTTCCAGACTTCTGTGATCTCTTC 846 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 767 TGAGCACCGTCTTGGCTCGTGGTTGATGCTCACTTGTTTCCAGACTTCTGTGATCTCTTC 826 Query 847 TTCTATGTTCTTGACGGCTATGGCTGCGAATCCTTTGAGTGCTAATTTGGCGTTTAACAC 906 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 827 TTCTATGTTCTTGACGGCTATGGCTGCCAATCCTTTGAGTGCTAATCTGGCGTTTAACAC 886 Query 907 GATTAAGCAGACGATTGGATGGACTGATTGGGCTAAAGCTGCGATTGTACCAGGACTTGT 966 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 887 GATCAAGCAGACGATTGGATGGACTGATTGGGCAAAAGCTGCGATTGTACCAGGACTTGT 946 Query 967 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTCATCTATCCTCCTACGGTGAAGAGCAG 1026 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 947 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTTATCTATCCTCCTACGGTGAAGAGCAG 1006 Query 1027 TCCTGATGCTCCTAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1086 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 CCCTGATGCTCCCAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1066 Query 1087 CGAATTGATTATGGCTGCCACTTTATTCCTCACGGTTGGTCTCTGGATCTTTGGAGCTAA 1146 ||| ||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1067 CGAGTTGATTATGGCCGCTACTTTGTTCCTCACGGTTGGTCTCTGGATTTTTGGAGCTAA 1126 Query 1147 GTTGGGTGTAGATGCTGTGACTGCAGCCATTCTTGGATTATCAGTCCTTCTTGTGACAGG 1206 |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1127 GTTGAGTGTAGATGCTGTGACAGCAGCCATTCTTGGATTATCAGTCCTCCTTGTGACAGG 1186 Query 1207 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCGGTCGCATGGGACACACTCACCTGGTT 1266 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1187 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCAGTCGCATGGGACACACTCACCTGGTT 1246 Query 1267 CGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1326 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1247 TGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1306 Query 1327 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCTTTTGGAAT 1386 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1307 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCATTTGGAAT 1366 Query 1387 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCTAGTGGAGCTGCCCACATTGG 1446 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1367 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCCAGTGGAGCTGCTCACATTGG 1426 Query 1447 TGCTATGTTCACTGCCTTTTTATCGGTTTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1506 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1427 AGCTATGTTCACTGCCTTTTTATCGGTCTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1486 Query 1507 AGCCTTGGTTCTTGCGTTCCTT-TCCAACCTGATGGGAGGATTGACCCATTATGGTATCG 1565 ||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 1487 AGCCTTGGTTCTTGCATTC-TTATCCAACCTGATGGGAGGATTGACTCATTATGGTATCG 1545 Query 1566 GGTCTGCGCCTATCTTCTACGGAGCTAACTACGTGCCGCTGGCTAAATGGTGGGGCTATG 1625 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| Sbjct 1546 GGTCTGCGCCTATCTTCTACGGGGCTAACTATGTGCCGTTGGCTAAATGGTGGGGCTATG 1605 Query 1626 GATTCCTGATTTCAATAGTCAACATTCTCATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1685 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1606 GATTCCTGATTTCAATAGTCAACATTCTTATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1665 Query 1686 AGTTCATTGGCTTGTGGTGAGGACCACCATACACCAATCTTCCCATTCTTTTCCTTACTT 1745 ||||||||||||||||||||||||||| | |||||| | |||||||||||||||||| | Sbjct 1666 AGTTCATTGGCTTGTGGTGAGGACCACAACACACCAGTATTCCCATTCTTTTCCTTA-T- 1723 Query 1746 ATATATATAATCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATTGAAA-TCAGG 1804 ||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1724 ATATATA-A-TCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATT-AAACTCAGG 1780 Query 1805 GTTATAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1840 ||| |||||||||||||||||||||||||||||||| Sbjct 1781 GTTTTAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1816 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73133270400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5