BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13050.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488121 jgi|Araly1|488121|fgenesh2_kg.6__1255__AT5G13050.1 1554 0.0
> Ahg488121 jgi|Araly1|488121|fgenesh2_kg.6__1255__AT5G13050.1
Length=1198
Score = 1554 bits (841), Expect = 0.0
Identities = 965/1024 (94%), Gaps = 12/1024 (1%)
Strand=Plus/Plus
Query 2 TTTTGTCGTTTATGGTTTGGAATAATTTCCCTGCAGtttttttttCTTCTTAAAGAACa- 60
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1 TTTTGTCGTTTATGGTTTGGAATAATTTCCCTGCAG-TTTTTTTT-TTCTTAAAGAA-AG 57
Query 61 aaaaaaaaaCGGGAACTTGTAATGATTGGAGCTCGCGTCTTTTGTATCACCACGACAGCA 120
|||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 58 AAAAAAAAACGGGAGCTTGAAATGATTGGAGCTCGCGTCTTTTGTATCAGCACGACAGCA 117
Query 121 CTACGAAGATCACCAATCTTCTTCTTCCCCAAGATCCCGACCCGACCCGTTTTCAGATTA 180
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTACAAAGATCATCAATCTTCTTCTTCCCCAAGATCCCGACCCGACCCGTTTTCAGATTA 177
Query 181 TCACCAGCTACTAGACCCATCGTCGCCATGAGCACCACCAGCAAAAACCAAGAGGAACTC 240
| | || | | | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 178 TTATCA-C--C-CG--CAATCGTCGCCATGAGCACCACCAGCAAAAGCCAAGAGGAACTC 231
Query 241 GATTCCATTTTCAAGCAGAAGCGGGTCGTGCGCTCCACTGTCCGCAAATCCCTAAAAGCC 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 232 GATTCCATTTTCAAGCAGAAACGGGTCGTGCGCTCCACTGTCCGCAAATCCCTAAAGGCC 291
Query 301 ATGGACCCTTCTCTCCGAACCCAACAAGATGAGGCAATTCAGAAGACTGTTCTTGAAGCT 360
||||||||||||||||||||||||||||||||| | ||||| || ||| |||||||||||
Sbjct 292 ATGGACCCTTCTCTCCGAACCCAACAAGATGAGTCCATTCAAAACACTCTTCTTGAAGCT 351
Query 361 CCCTGGTTCAAATCATGTAAGGGATTGTGTGCTTACATTAGCTGCAAATCTCTCAATGAA 420
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 352 CCCTGGTTCAAATCATGTAAGCGATTGTGTGCTTACATTAGCTGCAAGTCTCTCAATGAA 411
Query 421 GTCGACACTTCTAAAATCCTCTCTGAGATTCTGCAACATCCAGATTCAAATACTCAGAAA 480
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 412 GTCGACACTTCTAAAATCCTCTCTGAGATTCTGCAAAATCCTGATTCAAATACTCAGAAA 471
Query 481 AAGCTATATGTCCCTTGGGTGGAGGATAAGAACAGTAACATGCGCATGTTGCACATATCT 540
||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||
Sbjct 472 AAGCTATATGTCCCTTGGGTGGAGGATAAGAACAGCAACATGCGTATGCTGCACATTTCT 531
Query 541 CATATGGAAGACCTTGTTGCAAACTCAATGAACATTTTGGAACCAGCTCCTGTTGATGCC 600
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 CATATGGAAGACCTTATTGCAAACTCGATGAACATTTTGGAACCAGCTCCTGTTGATGCC 591
Query 601 CAAGGGAATGACCGTGAAGATGTGTTGCAAGCAGATGAACCGATCGATTTGTTCATCTTG 660
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 592 CAAGGGAATGAGCGTGAAGATGTGTTGCAAGCAGATGAACCGATAGATTTGTTCATCTTG 651
Query 661 CCAGGTCTTGCGTTTGACAGATGTGGGCGACGTTTAGGTCGTGGAGGTGGCTACTACGAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CCAGGTCTTGCGTTTGACAGATGTGGGCGACGTTTAGGTCGTGGAGGTGGCTACTACGAC 711
Query 721 ACTTTCTTGAAGAGATATCAGGACCGTGCAAAGGAGAAGGGTTGGAGATATCCACTTATG 780
||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 712 ACTTTCTTGAAGAGATACCAGGATCGTGCAAAGGAGAAGTATTGGAGATATCCACTTATG 771
Query 781 GTTGCATTGTCATACTCGCCTCAAATTCTTGAGGATGGAAGTATTCCTGTAACACCTAAT 840
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 772 GTTGCATTGTCATACTCGCCTCAAATTCTTGAGGATGCAAGTATTCCTGTAACACCGAAT 831
Query 841 GATGTTCTGATCGATGCCCTTGTGACACCTTCTGGTGTGGTTCCCATCACCCCTCGTGCT 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 832 GATGTTCTGATCGATGCCCTTGTGACACCTTCTGGTGTGGTTCCCATTACCCCTCGTGCT 891
Query 901 ACCGAGAGCATGTGAGCTCAGGAGCTTGTGTTTGGAGCTGACCCTCAGATAATCCGA-AG 959
| |||||| ||||||||||| |||||||||||||||||||| ||||||| || || ||
Sbjct 892 ATCGAGAGAATGTGAGCTCAACAGCTTGTGTTTGGAGCTGACACTCAGATGATTCGTTAG 951
Query 960 GTCGGCGCTTGAAGGCTACATTCTGGAAGTTGCTAATTTAGTATCAGCTTCTGTAGTTGC 1019
| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 952 TT-GGCGCTTGAAGGCTACATTCTGGAATTTGCTAATTCAGTATCAGCTTCTGTAGTTGC 1010
Query 1020 CACT 1023
||||
Sbjct 1011 CACT 1014
Score = 97.1 bits (52), Expect = 3e-19
Identities = 166/215 (77%), Gaps = 32/215 (15%)
Strand=Plus/Plus
Query 1056 TCTTGTATGATAAAATATGAAAGAAGATTAG-TCCAATGGTCTCTCACCTGTTTATTCCA 1114
||||||||||| | ||||||||||||||| | |||||| | ||||||||||||||| |||
Sbjct 1015 TCTTGTATGATGAGATATGAAAGAAGATT-GATCCAATTGCCTCTCACCTGTTTATGCCA 1073
Query 1115 TATCAAGTTTTGTCGGGTAATAACAATCTTTTTAATCGCATAAAATGATATTGGCTCTTG 1174
|||||| || | | | ||||| |||||| || ||| || ||| |||||
Sbjct 1074 TATCAA-----GT----T--T-----T-TTTTT-ATCGCACAAGATGTTACTGGTTCTTG 1115
Query 1175 GGTTCTTTTGTTGAGCTTCTCATGGAAATCTATATGTACTCAAATCTTTATTCAATGTAA 1234
||||||||| ||||| | | | ||||||||||||||||||||||||||||||
Sbjct 1116 GGTTCTTTTCTTGAG-----C-T-----T-TATATGTACTCAAATCTTTATTCAATGTAA 1163
Query 1235 AAACAAAATCCTGAAAACAGCAAAGTTTTTCTTGT 1269
||||||| | ||||||| | |||||||||||||
Sbjct 1164 AAACAAATTAGAGAAAACATCGAAGTTTTTCTTGT 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5