BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13100.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940775 jgi|Araly1|940775|scaffold_601319.1 1781 0.0
> Ahg940775 jgi|Araly1|940775|scaffold_601319.1
Length=1108
Score = 1781 bits (964), Expect = 0.0
Identities = 1061/1109 (96%), Gaps = 1/1109 (0%)
Strand=Plus/Plus
Query 107 TTTTGGCAATAATCTTTTAAGAAATGGGAAAGCTTTTGTGTGATTCAACGGCGACATTTC 166
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTTTGGTAATAATCTTTTAAGAAATGGGAAAGCTTTTGTGTGATTCCACGGCGACATTTC 60
Query 167 AATCTCCTTCACCAACGGTTCCTTGGAGAGAACCTTCTACAGTCGCCGTGTCTCTCGAAG 226
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 61 AATCTCCTTCACCAACGGTTCCTTGGAGAGAACCTTCTACAGCCGCAGTGTCTCTCGACG 120
Query 227 ATGTAGATCTTGTTGACCAATCCGCGGCTGCTGCGGCGGTGGACGCGGTTGAGAAGACAA 286
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 ATGTGGATCTTGTTGACCAATCCGCGGCTGCTGCGGCGGTGGAAGCGGTTGAGAAGACAA 180
Query 287 TGGCCGCCGCAACTACCACCGCTTGGGATGAGGTTTTTGGATTGGAGGAGGCGCAAAGAC 346
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGGCCGCCGCAACAACCACCGCGTGGGATGAGGTTTTTGGATTGGAGGAGTCGCAAAGAC 240
Query 347 GGCATCTGAGCCGGCTACACGCGAGAGGTGTGTTGTGGAAACATCCTGGTAAAGATGAAT 406
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 241 GGCATCTGAGCCGGCTACACGCGAGGGGTGTGTTGTGGAAACATCCTGGGAAAGATGAAT 300
Query 407 CCTCTGCTTCCGTCGTTTTCCGTCTCTCTCACGGCGGAGAGGTTTCTTCCGACGGGAACT 466
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 CCTCAGCTTCCGTCGTTTTCCGTCTCTCACACGGCGGAGAGGTTTCTTCCGACGGGAACT 360
Query 467 GTTTGTTCACCGCTTCTCAGAAGGCTATGGAGGCGCGTGGGATCGACGCGCGAGATTTAC 526
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 361 GTTTGTTCACGGCGTCTCAGAAGGCCATGGAGGCGCGTGGGATCGACGCGCGAGATCTAC 420
Query 527 GGCGGCGGACGGTGAGGAGGTTTTTGGAGGATTTCAGATCTGCTAGCGAGGAAGAGAAGG 586
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 GGCGGCGGACGGTGAGGAGGTTTTTGGAGGATTTCAGATCTGCTAGCGAGGAGGAGAAGG 480
Query 587 AGGTTATTACGGATGCGATTAGGCATATGTATTCGCCGGATCTGAAGAGTGGTTGGGGGA 646
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGTTATTACGGATGCGATTAGGCATATGTATTCGCCGGATCTGAAGAGTGGTTGGGGGA 540
Query 647 TTCATATTGTCCAGGAAGAGAAGTTGTTGGCGAAAAAAGATGAACGTGAGAGTCTTGATT 706
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 541 TTCATATTGTCCAAGAAGAGAAGTTGTTGGCGAAAAAAGATGATCGTGAGAGTCTAGATT 600
Query 707 CCGCCATTGAAGAGCTTTTACAGATTGGGATGCATAGAGAAACTGCTGCAGAGTCAATCT 766
||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||
Sbjct 601 CCGCCATTGAAGAGCTTATACAGATTGGGATGCAGAGAGAAACTGCAGCAGAGTCAATCT 660
Query 767 ATAGAGAGAGGTGTCTTCCGGTGAATGATGGACTTAGTTGGTCTAAGTACATGTCGATTT 826
| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 661 ACAGAGAGAGGTGTCTTCCGGTGAACGATGGACTTAGTTGGGCTAAGTACATGTCGATTT 720
Query 827 CAGGCTCAACAGAGGATGAGTATGATATCATTACCTTGCAGTATACGGAAGATGGGTTGT 886
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 CAGGCTCAACAGAGGATGAGTATGATATTATTACCTTGCAGTATACGGAAGATGGGTTGT 780
Query 887 TATCTGTAGATGAGAACCGAGAAGGACGTGCAGCTGCGTTTGGGGATGACATAGCAATCG 946
|||||||||| |||||||||||||||| ||||||||| ||||| ||||| |||||||| |
Sbjct 781 TATCTGTAGAAGAGAACCGAGAAGGACATGCAGCTGCTTTTGGAGATGATATAGCAATTG 840
Query 947 AGTGTCTAGCCACTGAGTTCAAACGAGAAATCTATGTGGTGCAAGCGCATGGATCAGATG 1006
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AATGTCTTGCCACAGAGTTCAAACGAGAAATCTATGTGGTGCAAGCGCATGGATCAGATG 900
Query 1007 GGATGGTAGAGGAAGAGAACTGTGTGTTCTTTCTTCCTCACAAACCAAGAAGTGAAGTTC 1066
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 GGATGGTAGAGGAAGAGAACTGTGTGTTCTTCCTTCCTCACAAACCAAGAAGTGAAGTTC 960
Query 1067 TTGAAGTCCCAGTCTTTCTATTCATGAAAGGCACTGGTTGGTGTGGTGGTGGAGCAGACC 1126
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 961 TTGAAGTCCCAGTCTTTCTTTTCATGAAAGGCACAGGTTGGTGTGGTGGCGGAGCAGACC 1020
Query 1127 ATTACGAGCCCTTGATAGCGAATCCATCTCCTCTGATATCTCATGAGAAAGTCGCCCTCG 1186
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1021 ATTACGAGCCTTTGATTGCGAATCCATCTCCGCTGATATCTCATGAGAAAGTCGCCCTCG 1080
Query 1187 TTCTCTGAATTTTGGAGCTTCTTCAAAAT 1215
|||||| ||||||| ||||||||||||||
Sbjct 1081 TTCTCTAAATTTTG-AGCTTCTTCAAAAT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5