BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13120.1 Length=1055 Score E Sequences producing significant alignments: (Bits) Value Ahg488128 jgi|Araly1|488128|fgenesh2_kg.6__1262__AT5G13120.1 1064 0.0 > Ahg488128 jgi|Araly1|488128|fgenesh2_kg.6__1262__AT5G13120.1 Length=1051 Score = 1064 bits (576), Expect = 0.0 Identities = 616/635 (97%), Gaps = 4/635 (1%) Strand=Plus/Plus Query 53 TTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCAAATCCGAAGTCGCTCTCAGCT 112 |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| Sbjct 1 TTTTGAGCTCCAATGGCGGCCTTATCGATGACTCTGTCAAATCCGAAGTCGCTGTCAGCT 60 Query 113 CCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTG 172 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 GCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTCTCACATCTACCTCTTTCCGATTG 120 Query 173 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCA 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCGTCA 180 Query 233 TCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTG-TTCAATC 291 |||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||| Sbjct 181 TCGCTCCTCCTTCACACGTCTTCTACCAAAAGAAACCACCGCTGCTTCTC-GATTCAATC 239 Query 292 CAATGCTGAGGTGGTTA-CTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 350 |||| ||||| | |||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 240 CAATTCTGAGATTGTTAGC-GAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 298 Query 351 TAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 410 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TAAGTGTTGGAAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 358 Query 411 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 418 Query 471 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 478 Query 531 TTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 590 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TTGAAAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 538 Query 591 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATA 650 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 539 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTGAGTATGGCAAATGCTGGCCCTAATA 598 Query 651 CAAATGGAAGTCAGTTCTTTATCTGCACTATTAAG 685 ||||||||||||||||||||||||||||| ||||| Sbjct 599 CAAATGGAAGTCAGTTCTTTATCTGCACTGTTAAG 633 Score = 425 bits (230), Expect = 3e-118 Identities = 334/377 (89%), Gaps = 35/377 (9%) Strand=Plus/Plus Query 686 ACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTG 745 |||||||||||||||||||| ||||| | | | ||||||||||||||||||||| Sbjct 701 ACGTCATGGTTGGACGGAAGGCATGT-G-G-T-------GTAATAGAAGGAATGGAAGTG 750 Query 746 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 751 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 810 Query 806 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAA 865 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 811 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGCAAGATCATT-AACCAAA 869 Query 866 ATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAAT 925 | ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| Sbjct 870 ACCTTGTAGACATGAGATGGAGCCTGTGTTTGCACTTTACAACCCTTTCTTTTGTGTAAT 929 Query 926 GGATTTGTATCCCCTTCTTCC--A------AAAA-TTTAAGAAAGAAATAGTATTCCGCT 976 ||||||||||||||||||||| | |||| ||||||||||||||||| || | Sbjct 930 GGATTTGTATCCCCTTCTTCCTGACCTCCCAAAAATTTAAGAAAGAAATAGT-TT----T 984 Query 977 GCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTA 1036 | |||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 985 G----------AACTCAGATTTCATTTCATTGGTTTGTTTCGAAATTAACCAATGTGTTA 1034 Query 1037 TAGCGGTTCAGTTGCAT 1053 ||||||||||||||||| Sbjct 1035 TAGCGGTTCAGTTGCAT 1051 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39266604510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5