BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13160.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940781 jgi|Araly1|940781|scaffold_601325.1 2346 0.0
Ahg319187 jgi|Araly1|319187|fgenesh1_pm.C_scaffold_3002203 176 5e-43
> Ahg940781 jgi|Araly1|940781|scaffold_601325.1
Length=1413
Score = 2346 bits (1270), Expect = 0.0
Identities = 1367/1413 (97%), Gaps = 9/1413 (1%)
Strand=Plus/Plus
Query 251 TTGGGAAAATTGAGTAAAGGAGGAGATGGGTTGTTTCTCGTGTTTTGATTCGA--G-TGA 307
||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 TTGGGAAAATTGAGT---GGAGGAGATGGGTTGTTTCTCGTGTTTTGATTCGAGTGATGA 57
Query 308 TGACGAGAAGCTGAATCCAGTTGATGAATCTAATCATGGTCAGAAGAAACAATCACAACC 367
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 58 TGACGAGAAGCTGAATCCAGTTGTTGAATCT-A--ATGGTCAGAAGAAACAATCACAACC 114
Query 368 GACAGTATCCAATAACATATCTGGACTCCCTTCAGGTGGGGAGAAGCTTAGCTCAAAGAC 427
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 115 GACAGTATCCAATAACATTTCTGGACTTCCTTCAGGTGGGGAGAAGCTTAGCTCAAAGAC 174
Query 428 CAATGGAGGATCAAAAAGGGAGCTACTGCTTCCAAGGGATGGACTTGGACAAATTGCTGC 487
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 175 CAATGGAGGATCAAAAAGGGAGCTACTGCTTCCAAGGGATGGGCTTGGACAAATTGCTGC 234
Query 488 TCATACATTTGCTTTCCGCGAGCTTGCTGCTGCAACTATGAACTTTCATCCTGACACTTT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TCATACATTTGCTTTCCGCGAGCTTGCTGCTGCAACTATGAACTTTCATCCTGACACTTT 294
Query 548 CTTAGGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCACCGGTCAGGT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTTAGGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCACCGGTCAGGT 354
Query 608 TGTTGCTGTTAAACAACTAGACAGGAATGGTCTACAAGGTAACAGAGAATTTCTGGTAGA 667
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGTTGCTGTTAAACAACTGGACAGGAATGGTCTACAAGGTAACAGAGAATTTCTGGTAGA 414
Query 668 GGTTCTTATGCTCAGTCTTCTTCATCATCCCAACTTAGTCAACCTTATTGGTTATTGTGC 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGTTCTTATGCTCAGTCTTCTTCATCATCCCAACTTAGTCAACCTTATTGGTTATTGTGC 474
Query 728 TGATGGAGATCAACGCCTCTTGGTCTACGAGTTTATGCCGTTAGGATCATTGGAAGATCA 787
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 475 TGATGGAGATCAACGCCTCTTAGTTTACGAGTTTATGCCGTTAGGATCATTGGAAGATCA 534
Query 788 CCTCCACGATCTTCCACCGGATAAGGAGGCCTTAGATTGGAACATGAGAATGAAAATAGC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCTCCACGATCTTCCACCGGATAAGGAGGCCTTAGATTGGAACATGAGAATGAAAATAGC 594
Query 848 TGCTGGTGCGGCGAAAGGATTGGAATTTCTACATGATAAGGCAAACCCTCCGGTTATTTA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGCTGGTGCGGCGAAAGGATTGGAATTTCTACATGATAAGGCAAACCCTCCGGTTATTTA 654
Query 908 TAGAGATTTTAAGTCATCAAATATTTTACTGGATGAGGGTTTCCACCCTAAGCTTTCTGA 967
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 655 TAGAGATTTTAAGTCATCAAACATTTTACTGGATGAGGGTTTCCACCCAAAACTTTCTGA 714
Query 968 TTTTGGACTTGCTAAACTCGGACCAACGGGAGACAAATCTCATGTCTCCACTAGAGTTAT 1027
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTTTGGGCTTGCTAAACTGGGACCAACGGGAGACAAATCTCATGTCTCCACTAGAGTTAT 774
Query 1028 GGGAACTTATGGTTATTGTGCTCCCGAGTACGCAATGACGGGACAATTGACAGTAAAATC 1087
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 775 GGGAACTTATGGTTATTGTGCTCCCGAATACGCAATGACGGGACAATTGACAGTAAAATC 834
Query 1088 AGATGTCTACAGTTTTGGTGTGGTTTTTCTCGAGCTCATTACTGGTCGCAAAGCTATAGA 1147
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGATGTATACAGTTTTGGTGTGGTTTTTCTCGAGCTCATTACTGGTCGCAAAGCTATAGA 894
Query 1148 CAGCGAGATGCCTCATGGAGAGCAGAACCTGGTGGCTTGGGCTCGCCCATTGTTCAACGA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAGCGAGATGCCTCATGGAGAGCAGAACCTGGTGGCTTGGGCTCGCCCATTGTTCAACGA 954
Query 1208 CAGGCGAAAGTTCATAAAACTGGCTGATCCAAGGTTAAAGGGGCGGTTTCCAACGCGTGC 1267
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 955 CAGGCGAAAGTTCATAAAACTGGCGGATCCAAGGTTAAAGGGGCGGTTTCCAATGCGTGC 1014
Query 1268 ACTCTACCAAGCTTTAGCTGTGGCATCAATGTGCATCCAAGAACAGGCGGCTACACGTCC 1327
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1015 ACTCTACCAAGCTTTAGCTGTGGCTTCAATGTGCATCCAAGAGCAGGCGGCTACACGTCC 1074
Query 1328 TCTCATAGCAGATGTTGTCACTGCACTCTCCTATCTTGCAAACCAAGCTTATGATCCAAG 1387
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1075 TCTCATAGCAGATGTTGTCACTGCACTCTCTTATCTTGCAAACCAAGGTTATGATCCAAG 1134
Query 1388 TAAAGATGATAGTAGAAGAAACCGGGATGAAAGAGGTGCAAGGTTAATAACAAGGAACGA 1447
|||||||| |||| ||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 1135 CAAAGATGACAGTAAAAGAAACCGAGATGAAAGAGGGGCGAGGTTAATAACAAGAAACGA 1194
Query 1448 CGATGGAGGTGGCTCGGGAAGTAAATTCGATTTAGAAGGTTCAGAGAAAGAAGATTCACC 1507
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 1195 CGATGGAGGTGGCTCGGGAAGTAAATTCGACCTAGAAGGTTCCGAGAAAGAAGATTCGCC 1254
Query 1508 GAGAGAGACAGCTCGGATATTGAACCGAGATATCAATAGGGAGCGTGCGGTTGCAGAGGC 1567
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1255 AAGAGAGACAGCTCGGATATTGAACCGAGATATCAACAGGGAGCGTGCAGTTGCAGAGGC 1314
Query 1568 TAAGATGTGGGGAGAGAGTTTGAGGGAGAAACGAAGACAGAGCGAGCAGGGTACTTCAGA 1627
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TAAAATGTGGGGGGAGAGTTTGAGGGAGAAACGAAGACAGAGCGAGCAGGGTACTTCAGA 1374
Query 1628 GAGCAACAGTACCGGGTAGAACCGGTTTGGGTC 1660
||||||||||||||||||||||||||||| |||
Sbjct 1375 GAGCAACAGTACCGGGTAGAACCGGTTTGAGTC 1407
> Ahg319187 jgi|Araly1|319187|fgenesh1_pm.C_scaffold_3002203
Length=1131
Score = 176 bits (95), Expect = 5e-43
Identities = 432/588 (73%), Gaps = 50/588 (9%)
Strand=Plus/Plus
Query 552 GGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCA-CCGG-TCAGGTTG 609
|||||||| || || || || || |||||||||| ||| | || | |||| ||||| |
Sbjct 214 GGCGAAGGCGGGTTCGGGCGGGTTTACAAAGGAAAGCTCG--AGAATCCGGCACAGGTCG 271
Query 610 TTGCTGTTAAACAACTAGACAGGAATGG-TCTACAAGGTAACAGAGA-ATTTC-TGGTAG 666
| || || |||||||| || |||||||| | ||||||| ||| ||| | ||| |||| |
Sbjct 272 TGGCAGTGAAACAACTTGATAGGAATGGAT-TACAAGG--ACAAAGAGAGTTCTTGGTCG 328
Query 667 AGGTTCTT-ATGCTCAGTCTTCTTCATCATCCCAA-CTTAGTCAACCTTATTGGTTATTG 724
||||| || ||||| ||||||||||||||| | || ||| || || ||||| ||||||||
Sbjct 329 AGGTT-TTGATGCTTAGTCTTCTTCATCATACAAATCTT-GTGAATCTTATCGGTTATTG 386
Query 725 TGCTGATGGAGATCAACG-CCTCTTGGTCTACGAGTTTATG-CCGTTAGGATCAT-TGGA 781
|| |||||||| ||| | | |||| || ||||||| |||| || || ||||| | | ||
Sbjct 387 CGCCGATGGAGACCAAAGACTTCTT-GTTTACGAGTATATGCCCCTT-GGATC-TCTAGA 443
Query 782 AGATCACCTCCACGATCTTCCA-CC-GGATAAGGAGGCC-TTAGATTGGAACA-TGAGAA 837
|||||| |||| ||||||| | || ||| || | || |||| ||||||| | | |
Sbjct 444 AGATCATCTCCTCGATCTT-GAGCCGGGACAA--AAACCACTAGACTGGAACACT-CGTA 499
Query 838 TGAAAATAGCTGCT-GGTGCGGCGAAAGG-ATTGGAATTTCTACATGATAAGGCAAACCC 895
| || || ||| | || ||||| ||||| ||| || | ||| |||||| |||| | ||
Sbjct 500 TTAAGATCGCT-ATAGGAGCGGCAAAAGGAATT-GAGTATCTCCATGATGAGGCCGATCC 557
Query 896 TCCGGTTATTTATAGAGATTTTAAGTCATCAAATATTTTACTGGA-TGAGGGTTTCCACC 954
||| || ||||| ||||| |||| || |||||||| || || || | | |
Sbjct 558 TCCAGTGATTTACCGAGATCTTAAATCGTCAAATATATTGCTTGACCCA-AAATACGTTG 616
Query 955 CTAAGCTT-TCTGATTTTGGACTT-GCTAAA-CTCGGACCAACGGGAGACAAATCT-CAT 1010
| || || || ||||| || || || ||| || || || ||||||| | || |||
Sbjct 617 C-AAAATTATCGGATTTCGG-TTTAGC-AAAGCTTGGTCCTGTTGGAGACACA-CTACAT 672
Query 1011 GTCTCCACTAGAGTTATGGGAACTTATGGTTATTGTGCTCCCGAGTACGCA-ATGA-CGG 1068
|| || | ||||||||||||||||||||||||||||||| || || || | || | |
Sbjct 673 GTGTCTTCCCGAGTTATGGGAACTTATGGTTATTGTGCTCCTGAATAT-CAGA-GAACCG 730
Query 1069 GACAAT-TGACAG-TAAAATCAGATGTCTACAGTTTTGGTGTGGTTTT 1114
| | || | ||| |||| || |||||||| || ||||| || |||||
Sbjct 731 G-CTATCTTACAAATAAA-TCTGATGTCTATAGCTTTGGAGTTGTTTT 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5