BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13410.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488160 jgi|Araly1|488160|fgenesh2_kg.6__1294__AT5G13410.1 1312 0.0
> Ahg488160 jgi|Araly1|488160|fgenesh2_kg.6__1294__AT5G13410.1
Length=803
Score = 1312 bits (710), Expect = 0.0
Identities = 772/803 (96%), Gaps = 0/803 (0%)
Strand=Plus/Plus
Query 60 TTAAGTTTCACTCTAATGGCGTCAATTTCGTCCTTTGGCTGCTTCCCTCAATCCACAGCG 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAAGTTTCAGTCTAATGGCGTCAATTTCGTCCTTTGGCTGCTTCCCTCAATCCACAGCG 60
Query 120 CTCGCCGGAACTTCCTCCACCACCAGATGCCGGACGACTGTGGCTGCTCGATTAGCTGAC 179
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CTCACCGGAACTTCCTCCACCACCAGATGCCGGACGACTGTGGCTGCTCGGTTAGCTGAC 120
Query 180 CAATCAGATGACTTCGCTCCTCTTCGTTCTTCTGGTGGGAATTGTGGATGTGTTAATAAT 239
||||||||||| ||| ||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 121 CAATCAGATGAATTCTCTCCTCTTCGTTCTTCTGGTGGGAATTGTGGCTGTGGTCATAAT 180
Query 240 TCTGGAGAGTTTGATCGCAGAAAGTTGTTGGTTTCTTCTGTTGGTTTGTTGATTGGAGCA 299
||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 181 TCTGGAGAGTTTGATCGGAGAAAGTTGTTGCTTTCTTCTGTTGGTTTATTGATTGGAGCC 240
Query 300 TTGTCATACGATTCTAAAGATGGAGACTTTGCATCAGCTTCTCAATTTGCTGACATGCCA 359
||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 241 TTGTCTTACGATGCTAAAGATGGAGACTTTGCCTCAGCTTCTCAATTCGCTGACATGCCA 300
Query 360 GCGCTTAAAGGGAAGGATTATGGCAAAACAAAAATGAAGTATCCAGATTATACAGAAACA 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GCGCTTAAAGGGAAGGATTATGGCAAAACCAAAATGAAGTATCCAGATTATACAGAAACA 360
Query 420 CAGTCTGGTCTTCAGTATAAGGATTTGCGAGTAGGAACTGGGCCTATAGCAAAAAAGGGA 479
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 361 CAATCTGGTCTTCAGTATAAGGATTTGCGACTAGGAACTGGGCCTATAGCAAAGAAGGGA 420
Query 480 GACAAAGTTGTGGTTGACTGGGACGGTTACACAATAGGGTACTATGGACGCATATTTGAA 539
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 421 GACAAAGTTGTGGTTGATTGGGACGGTTACACCATAGGTTACTATGGCCGCATATTTGAA 480
Query 540 GCTCGCAATAAAACAAAAGGGGGTTCTTTTGAGGGCGATGATAAGGAATTTTTCAAATTT 599
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 GCTCGCAACAAAACAAAAGGGGGTTCTTTTGAGGGGGATGATAAGGAGTTTTTCAAATTT 540
Query 600 ACCTTAGGATCCAATGAGGTGATACCTGCTTTTGAGGAGGCTGTCTCTGGGATGGCTCTC 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACCTTGGGATCCAATGAGGTGATACCTGCTTTTGAGGAGGCTGTCTCTGGGATGGCTCTC 600
Query 660 GGTGGTATCAGAAGGATAATTGTACCGCCAGAACTAGGATACCCGGATAATGACTACAAC 719
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 601 GGTGGTATCAGAAGGATAATTGTACCGCCCGAGCTAGGATACCCGGATAATGACTACAAC 660
Query 720 AAGAGTGGGCCGAGGCCGATGACTTTCTCTGGACAACGTGCATTAGATTTTGTGCTGAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGAGTGGGCCGAGGCCGATGACTTTCTCTGGACAACGTGCATTAGATTTTGTGCTGAGG 720
Query 780 AACCAAGGGCTCATAGACAAGACACTTCTCTTTGATGTTGAACTCCTCAAAATTGTACCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AACCAAGGGCTCATAGACAAGACACTTCTCTTTGATGTTGAACTCCTCAAAATTGTACCC 780
Query 840 AATTGATGTAACATCGACAGTCT 862
|| ||||||||||||||||||||
Sbjct 781 AACTGATGTAACATCGACAGTCT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5