BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13420.1 Length=1705 Score E Sequences producing significant alignments: (Bits) Value Ahg488161 jgi|Araly1|488161|fgenesh2_kg.6__1295__AT5G13420.1 2460 0.0 > Ahg488161 jgi|Araly1|488161|fgenesh2_kg.6__1295__AT5G13420.1 Length=1627 Score = 2460 bits (1332), Expect = 0.0 Identities = 1511/1592 (95%), Gaps = 33/1592 (2%) Strand=Plus/Plus Query 1 AAAACTTCACCAACCCCATTTTTAAGCCCCTTTCTTTGTTTTTATCCTCCGATCGATCAA 60 |||||| |||||||||||||||| |||||||||| ||||||||||||||| ||||||||| Sbjct 1 AAAACTCCACCAACCCCATTTTT-AGCCCCTTTC-TTGTTTTTATCCTCCCATCGATCAA 58 Query 61 ACCAAGAAAAAACACTTTCGTATTTC-CCTCGACGaaaaaaaTGGCAACCATTTCGAATC 119 ||||||||||||| ||||| |||||| || |||||||| ||||||||||||||||||||| Sbjct 59 ACCAAGAAAAAACTCTTTCATATTTCACC-CGACGAAAGAAATGGCAACCATTTCGAATC 117 Query 120 TCGCTAATCTTCCCCGCGCCACCTGCGTCGACTCCAAATCTTCTTCCTCTTCCTCCGTCT 179 ||||||||||||||||||||||||||||||||||||||||||| | || | ||||||| Sbjct 118 TCGCTAATCTTCCCCGCGCCACCTGCGTCGACTCCAAATCTTC-T--TC-T--TCCGTCT 171 Query 180 TACCTAGATCCTTCGTCAATTTCCGCGCTTTGAATGCAAAGCTTTCCTCTTCTCAGCTTT 239 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 172 TACCTAGATCCTTCGTTAATTTCCGCGGTTTGAATGCAAAGCTTTCCTCTTCTCAGCTTT 231 Query 240 CTCTTCGTTATAACCAACGATCAATACCTTCCCTCTCTGTGAGGTGTTCAGTGTCTGGTG 299 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 232 CTCTTCGTTATAACCAACGATCAAGACCTTCCCTCTCTGTGAGGTGTTCAGTGTCTGGTG 291 Query 300 GAAATGGAACTGCTGGAAAGAGAACGACTCTTCATGATCTATATGAGAAGGAAGGTCAGA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GAAATGGAACTGCTGGAAAGAGAACGACTCTTCATGATCTATATGAGAAGGAAGGTCAGA 351 Query 360 GTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTG 419 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 352 GTCCTTGGTATGATAATCTATGCCGTCCAGTCACAGATCTTCTCCCCTTGATTGCTCGTG 411 Query 420 GTGTTAGAGGTGTTACTAGCAACCCTGCGATCTTCCAAAAAGCCATTTCCACTTCAAATG 479 |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 412 GTGTTAGAGGCGTTACTAGCAACCCTGCGATCTTCCAGAAAGCCATTTCCACTTCTAATG 471 Query 480 CTTATAATGATCAATTCAGGACACTTGTGGAATCGGGAAAGGACATTGAAAGTGCGTATT 539 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 472 CTTATAATGATCAGTTCAGGACACTTGTGGAATCAGGAAAGGACATTGAAAGTGCGTATT 531 Query 540 GGGAACTTGTGGTGAAGGATATTCAGGATGCCTGCAAACTTTTTGAGCCAATCTATGACC 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 GGGAACTTGTGGTGAAGGATATTCAGGATGCCTGCAAACTTTTTGAGCCAATCTATGACC 591 Query 600 AGACAGAAGGTGCGGATGGCTATGTCTCTGTTGAAGTTTCACCTAGGCTTGCTGATGATA 659 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 AAACAGAAGGTGCTGATGGCTATGTCTCTGTTGAAGTTTCACCTAGGCTTGCTGATGATA 651 Query 660 CCCAAGGAACTGTTGAAGCTGCTAAATATCTTAGCAAGGTTGTCAACCGTCGTAATGTCT 719 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 CCCAAGGGACTGTTGAAGCTGCTAAATATCTTAGCAAGGTTGTCAACCGTCGTAATGTCT 711 Query 720 ACATTAAGATTCCTGCTACTGCTCCATGCATTCCTTCCATCAGGGATGTCATTGCAGCTG 779 |||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 712 ACATTAAGATCCCGGCTACTGCTCCATGCATTCCTTCCATCAGGGATGTCATTGCATCTG 771 Query 780 GAATAAGTGTCAATGTCACGCTTATATTCTCAATCGCCAGATATGAAGCAGTGATCGATG 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 GAATAAGTGTCAATGTCACGCTTATATTCTCAATCGCCAGATATGAAGCAGTGATCGATG 831 Query 840 CATATTTGGATGGCCTCGAGGCGTCTGGACTTGATGACCTCTCAAGAGTTACCAGTGTTG 899 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 CATATTTGGACGGCCTCGAGGCGTCTGGACTTGATGACCTCTCAAGAGTTACCAGTGTTG 891 Query 900 CTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 CTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTA 951 Query 960 CCCCTGAAGCCTTAGATCTCCGTGGGAAGGCGGCTGTGGCTCAAGCTGCATTAGCATACA 1019 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 952 CCCCTGAAGCCCTAGATCTCCGTGGCAAGGCGGCTGTGGCTCAAGCTGCATTAGCATACA 1011 Query 1020 AGCTATACCAGCAGAAATTCTCTGGCCCAAGATGGGAAGCTCTGGTAAAGAAAGGTGCCA 1079 |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1012 AGCTGTACCAGCAGAAATTCTCAGGCCCAAGATGGGAAGCTCTGGTTAAGAAAGGTGCCA 1071 Query 1080 AGAAACAGAGACTTCTCTGGGCATCAACAAGTGTAAAGAACCCAGCTTACTCTGACACCT 1139 |||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1072 AGAAGCAGAGGCTTCTCTGGGCATCGACAAGTGTTAAGAACCCAGCTTACTCTGACACCT 1131 Query 1140 TATATGTCGCTCCTCTCATCGGACCTGACACTGTATCAACCATGCCGGATCAAGCCCTGG 1199 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1132 TATATGTCGCTCCTCTCATCGGACCTGACACTGTTTCAACCATGCCGGATCAAGCCCTGG 1191 Query 1200 AAGCATTCGCAGATCATGGAATAGTGAAGAGGACAATAGATGCGAATGTGTCAGAAGCAG 1259 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1192 AAGCATTTGCAGATCATGGAATCGTGAAGAGGACAATAGATGCGAATGTGTCAGAAGCAG 1251 Query 1260 AAGGGATTTACAGTGCACTAGAGAAGCTGGGAATAGACTGGAACAAAGTAGGAGAACAGT 1319 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1252 AAGGGATATACAGTGCACTAGAGAAGCTGGGAATAGACTGGAACAAAGTAGGGGAACAGT 1311 Query 1320 TGGAAGACGAAGGAGTAGATTCCTTCAAGAAGAGTTTCGAGAGTCTGCTCGGTACACTGC 1379 |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct 1312 TGGAAGACGAAGGAGTAGATTCGTTCAAGAAGAGTTTCGAGAGCCTGCTAGGTACACTGC 1371 Query 1380 AAGACAAGGCCAACACTCTCAAACTAGCCAGCCATTGAGGAAATGAGTCATCATTATGTT 1439 ||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| Sbjct 1372 AAGACAAGGCCAACACTCTCAAACTAGCCAGCCATTGAGGA--T----CAT--T-ATGTT 1422 Query 1440 TTTGGT---TA--CGCTAAAATAAAAA--GAAGAACCTTTGGCTTTTGTTCTTCAATCCT 1492 |||||| || | |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1423 TTTGGTGGGTAAACCCTAAAATAAAAAAAGAAGAACCTTTGGCTTTTGTTCTTCAACCCT 1482 Query 1493 TAT---GCATGCTTTCTAAAGTGGTTATGATGGATTTTGCTTGATGTTCCACATTATG-- 1547 ||| | |||||||||||||| ||||| |||| |||||||||||||||||||||||| Sbjct 1483 TATTATGTATGCTTTCTAAAGTTGTTATAATGGCTTTTGCTTGATGTTCCACATTATGAT 1542 Query 1548 GGTTATTCTATTTTCTTTGTTCTTGTAAGATG 1579 || | | |||| ||||||||||||| |||||| Sbjct 1543 GGGT-T-CTATCTTCTTTGTTCTTGCAAGATG 1572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63953521355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5