BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13440.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488163 jgi|Araly1|488163|fgenesh2_kg.6__1297__AT5G13440.1 1644 0.0
Ahg940809 jgi|Araly1|940809|scaffold_601353.1 1179 0.0
> Ahg488163 jgi|Araly1|488163|fgenesh2_kg.6__1297__AT5G13440.1
Length=1196
Score = 1644 bits (890), Expect = 0.0
Identities = 1107/1205 (92%), Gaps = 42/1205 (3%)
Strand=Plus/Plus
Query 56 AAAGGACTAATCTTTTTGTTTGCATCGGCC-AT-C-T--CTAACCTTACGATTGTGTGTT 110
|||||||||||||||||||||||||||||| || | | |||||||||||| | ||||||
Sbjct 27 AAAGGACTAATCTTTTTGTTTGCATCGGCCAATCCATCCCTAACCTTACGA-T-TGTGTT 84
Query 111 CTTGCTTTGAGCGAAACCCTAGAATCGGTCTTAACCCATTTGAGCAGAGATGCTGCGAGT 170
||||||||||||||||||||||| || | | ||| |||||||||||||||||||||||||
Sbjct 85 CTTGCTTTGAGCGAAACCCTAGATTCAGCCATAATCCATTTGAGCAGAGATGCTGCGAGT 144
Query 171 AGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGATCATCGACGGCGACCTCCTTCGTCCT 230
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 145 AGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGATCTTCGACGGCGACCTCCTTCGTCCT 204
Query 231 TTCCCGTGACCATACCCTTTCCGATGGAGGCAACTCCTCTTCCGCTTCTAGATCTGTCCC 290
||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||
Sbjct 205 TTCCCGTGACCATACCCTTTCCGATGGCGGAAACTCCCCTTCCGCCTCTAGATCTGTCCC 264
Query 291 CTCTGCAGATCTCTCATCTTTCAATTCTTACCACCGGAGCGTTATAAGAGGTTTTGCTTC 350
|||||||||||||||||||||||||||||||||||| ||| |||| ||||| || |||||
Sbjct 265 CTCTGCAGATCTCTCATCTTTCAATTCTTACCACCGCAGCCTTATTAGAGGGTTCGCTTC 324
Query 351 TCAAGTCATTACTCAGGGAAATGAGATAGGTTTTGGTTCGGAAGTCCCAGCCACAGTCGA 410
||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 325 TCAAGTCCTTACTCAAGGAAATGAGATAGGTTTTGCTTCGGAAGTCCCAGCCACTGTCGA 384
Query 411 AGCTGTCAAAACACCTAACTCAAAGATTGTCTATGACGACCATAACCATGAGCGTTACCC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGCTGTCAAAACACCTAACTCAAAGATTGTCTATGACGACCATAACCATGAGCGTTACCC 444
Query 471 ACCTGGTGACCCTAGCAAGCGGGCATTCGCCTATTTTGTCTTGTCGGGTGGAAGGTTTGT 530
|||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 445 ACCTGGTGACCCTAGCAAACGTGCATTTGCCTATTTTGTCTTGTCGGGTGGGAGGTTTGT 504
Query 531 TTATGCCTCTGTTCTCCGCCTGCTTGTTCTGAAGCTTATTGTGAGCATGTCTGCAAGTAA 590
||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 505 TTATGCCTCTGTTATCCGGCTGCTTGTTCTGAAGCTTGTTGTGAGTATGTCTGCAAGTAA 564
Query 591 AGATGTCCTTGCCCTTGCATCCCTCGAGGTTGACCTAGGGAGCATAGAACCAGGAACTAC 650
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 565 AGATGTCCTTGCCCTTGCATCCCTTGAGGTTGACCTAGGGAGCATCGAACCAGGAACTAC 624
Query 651 CGTGACAGTCAAGTGGCGTGGAAAGCCCGTCTTCATCAGGCGAAGAACAGAAGATGACAT 710
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 625 CGTGACAGTCAAGTGGCGAGGAAAGCCAGTCTTCATCAGGCGAAGAACAGAAGATGACAT 684
Query 711 CAAGCTGGCCAATAGTGTGGATGTTGGATCCCTGAGGGACCCACAAGAAGACTCGGTTAG 770
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 685 CAAGCTGGCCAATAGTGTGGATGTTGGATCCTTGAGGGACCCACAAGAAGACTCGGTTAG 744
Query 771 AGTCAAGAATCCAGAATGGTTGATCGTGGTTGGAGTATGCACTCATTTGGGGTGCATCCC 830
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 745 AGTCAAGAATCCTGAATGGTTAATCGTGGTTGGAGTATGCACTCATTTGGGGTGCATCCC 804
Query 831 CTTGCCTAATGCTGGTGATTATGGTGGTTGGTTTTGTCCGTGTCACGGATCACATTACGA 890
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 805 CTTGCCTAATGCTGGTGATTATGGCGGTTGGTTTTGTCCGTGTCACGGTTCGCATTATGA 864
Query 891 TATATCTGGAAGAATTAGGAAAGGTCCTGCACCATACAACCTGGAAGTACCGACCTACAG 950
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 865 TATCTCCGGAAGAATTAGGAAAGGTCCTGCACCATACAACCTGGAAGTACCAACCTACAG 924
Query 951 CTTCTTGGAAGAGAATAAATTACTCATTGGTTAATGAATAAAGCACAACAGTCCGAGTGT 1010
|||||||||||||||||| ||||||||||||| |||| ||||| || | |
Sbjct 925 CTTCTTGGAAGAGAATAAGTTACTCATTGGTTGATGAGTAAAG--------TC----T-T 971
Query 1011 CATGGTCTGGATGATCTTAAATCTGTTTTTGTTTTTATATTTTCCGGCATTTTAGCGTGC 1070
| | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 972 C--G-TCTGAATGATCTTAAATCTGTTTTTGTTTTAATATTTTCCGGCATTTTAGCGTGC 1028
Query 1071 AAGTTCGCTTTCCTCACACTTTGGGCTC--AGCAAAAATTGGCTTGTTTTGCTGAATAAT 1128
||| |||||| ||||||||||||| ||| ||||| | ||| ||||||||||||||||||
Sbjct 1029 AAGGTCGCTTCCCTCACACTTTGGACTCTCAGCAAGA-TTGTCTTGTTTTGCTGAATAAT 1087
Query 1129 ACAAACTTGTCATTGTATGACTTAGTATCTGTCTCATCTGGTGAAAATACATTGTTCATA 1188
||||||||||||||||||||| | |||||||||||||||| |||| ||||||||
Sbjct 1088 ACAAACTTGTCATTGTATGAC-------C-GTCTCATCTGGTGAAA-TACACTGTTCATA 1138
Query 1189 CTTCATAGTCTCTGTTTATTATTTGAAAAGAGTTTTGAATAGTATCATCCCTATTTTTCT 1248
| ||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1139 G--C-----CTCTGTTTATTATTTGAAAAGAGTTTTGAATAGTATCATGCCTGTTTTTCT 1191
Query 1249 TATGT 1253
| |||
Sbjct 1192 TTTGT 1196
> Ahg940809 jgi|Araly1|940809|scaffold_601353.1
Length=862
Score = 1179 bits (638), Expect = 0.0
Identities = 785/854 (92%), Gaps = 17/854 (2%)
Strand=Plus/Plus
Query 150 TTGAGCAGAGATGCTGCGAGTAGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGATCATC 209
|||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||
Sbjct 11 TTGAGCAGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTTTCCCAGAGATCTTC 70
Query 210 GACGGCGACCTCCTTCGTCCTTTCCCGTGACCATACCCTTTCCGAT---GGAGGCAACTC 266
| | ||||||||||||||| | |||||||||||| ||||||||||| || ||| ||||
Sbjct 71 GTCTGCGACCTCCTTCGTCGTCTCCCGTGACCATTCCCTTTCCGATGCCGGCGGCGACTC 130
Query 267 CTCTTCCGCTTCTAGATCTGTCCCCTCTGCAGATCTCTCATCTTTCAATTCTTACCACCG 326
|||||| ||| | ||||| |||||||||||||| || || || | |||||||||||
Sbjct 131 CTCTTCAGCTCCCAGATCCGTCCCCTCTGCAGA----TC-TC--TC-A-TCTTACCACCG 181
Query 327 GAGCGTTATAAGAGGTTTTGCTTCTCAAGTCATTACTCAGGGAAATGAGATAGGTTTTGG 386
|||| |||| |||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 182 GAGCCTTATTAGAGGTTTCGCTTCTCAAGTCCTTACTCAAGGAAATGAGATAGGTTTTGC 241
Query 387 TTCGGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGTCTATGA 446
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTCGGAAGTCCCAGCCACTGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGTCTATGA 301
Query 447 CGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGGGCATTCGCCTATTT 506
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 302 CGACCATAACCATGAGCGTTACCCGCCTGGTGACCCCAGCAAGCGTGCATTCGCCTATTT 361
Query 507 TGTCTTGTCGGGTGGAAGGTTTGTTTATGCCTCTGTTC-TCCGCCTGCTTGTTCTGAAGC 565
||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 362 TGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGT-CATCCGCCTGCTTGTTTTGAAGC 420
Query 566 TTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTCGAGGTTGACC 625
|| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TTGTTGTGAGTATGTCCGCAAGTAAAGATGTCCTTGCTCTTGCATCCCTCGAGGTTGACC 480
Query 626 TAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGTCTTCA 685
|||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 481 TAGGGAGCATTGAACCAGGAACTACTGTTACAGTCAAGTGGCGTGGAAAGCCAGTCTTCA 540
Query 686 TCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATCCCTGA 745
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 541 TCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATATCGGATCCCTCA 600
Query 746 GGGACCCACAAGAAGACTCGGTTAGAGTCAAGAATCCAGAATGGTT-GATCGTGGTTGGA 804
||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||
Sbjct 601 GGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTT-GTGGTTGGA 659
Query 805 GTATGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTGGTTT 864
|| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 GTGTGCACTCATCTGGGATGCATCCCCTTGCCTAATGCTGGTGATTATGGCGGTTGGTTT 719
Query 865 TGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGCACCA 924
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 720 TGTCCGTGTCACGGATCACATTATGATATCTCTGGAAGAATTAGGAAAGGTCCTGCACCA 779
Query 925 TACAACCTGGAAGTACCGACCTACAGCTTCTTGGAAGAGAATAAATTACTCATTGGTTAA 984
||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 780 TACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATTGGTTGA 839
Query 985 TGAATAAA-GCACA 997
| |||||| |||||
Sbjct 840 TTAATAAAAGCACA 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5