BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13510.1 Length=834 Score E Sequences producing significant alignments: (Bits) Value Ahg488173 jgi|Araly1|488173|fgenesh2_kg.6__1307__AT5G13510.1 1149 0.0 > Ahg488173 jgi|Araly1|488173|fgenesh2_kg.6__1307__AT5G13510.1 Length=757 Score = 1149 bits (622), Expect = 0.0 Identities = 717/761 (94%), Gaps = 13/761 (2%) Strand=Plus/Plus Query 5 ACAGTCTCCTCATCTTCTGAGCaaaaaaaTGGAAGTGGctcttctctccttctcttcttc 64 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ACAGTCTCCTCATCTTCTGAGC--GAAAATGGAAGTGGCTCTTCTCTCCTTCTCTTCTTC 58 Query 65 cttgtctcctctctGTCACCAGCGAATCTCAACTCTCACACCCAAAACCTCGAATTCCCC 124 |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| Sbjct 59 CTTGTCTCCTCTCTGTCACCAGCGAATCTCAACTCTTACACACAAAACCTCAAATTCCCC 118 Query 125 AAATTACCCTCGCCTCCCGGTCATCAGATCCGCGGTGTCTCGTAACAAGAAGGAAGAGAC 184 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 119 AAACTACCCTCGCCTCCCGGTCATCAGATCCGCCGTGTCTCGTAACAAGAAGGAAGAGAC 178 Query 185 TGTCGAAGCCGTCAAGTCTCACTTGGAGAACTGCCATCTCCTCGCCGCCATCAACTACAA 244 ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||| Sbjct 179 AGTCGAAGCCGTCAAGTCCCACCTGGAGAACTGCCACCTCCTTGCCGCCATCAACTACAA 238 Query 245 AGGCCTCACCGTCAAGCAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACTACAAAGCT 304 |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 239 AGGCCTCACCGTGAAACAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACCACAAAGCT 298 Query 305 CATCGTCGCCAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACCAAATGGGAAGCTCT 364 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 299 CATCGTCGCTAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACTAAATGGGAAGCTCT 358 Query 365 CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAGACCGATGAAATCCCTTC 424 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 359 CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAAACCGATGAAATCCCTTC 418 Query 425 TGCTATCAAACCCTACCGGAGCTTCCAGAAGGAACGCAAGCTTGAAAACAATGACTTTGC 484 || |||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||| Sbjct 419 CGCCCTCAAGCCCTACCGGAGTTTCCAGAAAGAACGCAAGCTTGAAGACAATGACTTTGC 478 Query 485 CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCTGACAA-TTTCAAAGTCCTCGAGACCA 543 ||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||| Sbjct 479 CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCCGACAACTTT-AAAGTTCTCGAGACCA 537 Query 544 TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCTATTA 603 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 538 TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCCATTA 597 Query 604 ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTACA 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 598 ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTATA 657 Query 664 TTAAGAAGTTGGAAGATGAGAGTAATGCATAGTTAA----GCTTGTACTAATC-T-TTT- 716 | ||||||||||| |||||||||||||||||||||| ||| ||||||||| | ||| Sbjct 658 TCAAGAAGTTGGAGGATGAGAGTAATGCATAGTTAATTAAGCT-GTACTAATCATCTTTT 716 Query 717 GGAGAATGTAATGTACGCAACAAAAGGCAATTC-AATTTTT 756 ||||||||||||||||||||||||||| ||||| ||||||| Sbjct 717 GGAGAATGTAATGTACGCAACAAAAGGAAATTCCAATTTTT 757 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30841439853 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5