BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13660.2 Length=2141 Score E Sequences producing significant alignments: (Bits) Value Ahg488185 jgi|Araly1|488185|fgenesh2_kg.6__1319__AT5G13660.1 2244 0.0 > Ahg488185 jgi|Araly1|488185|fgenesh2_kg.6__1319__AT5G13660.1 Length=1876 Score = 2244 bits (1215), Expect = 0.0 Identities = 1683/1896 (89%), Gaps = 83/1896 (4%) Strand=Plus/Plus Query 259 TGACGCCGCGTTCGAGCTACTGAAGTAGCTAACATCAACTTTTAAGAACATCGCTGCGAT 318 ||||| ||||||||||||||||||| |||||| || |||| ||||||||| | ||||||| Sbjct 46 TGACGGCGCGTTCGAGCTACTGAAGAAGCTAATATTAACTATTAAGAACAGCTCTGCGAT 105 Query 319 CTCACTCCCAGGGATGCAAATCCAAGATGATGAGAAAAGATATTAGCAGAAAGGATATAA 378 || |||||||||||||||| ||||||| ||||| | |||| |||| ||||||||| | Sbjct 106 CT-ACTCCCAGGGATGCAATTCCAAGAGGATGATAGCAGATTTTAGTAGAAAGGATTTTG 164 Query 379 TTGAGGAGATTCCATATTCTGGTTCTTCGAGAATGGAATTAAAGCGGAGTCATCATCAGT 438 ||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||| Sbjct 165 TTGAGAAGATTCCATATTCTGGTTCTTCAACAATGGAATTAAAGCGGAGTTATCATCAGT 224 Query 439 GGTTGACAGAAGAGTCTAGCTCAGAACTATTC-AGTAATAAGAGACAACAAGTGGTAGAG 497 ||||||||||| |||||||||| || ||||| || |||||||| |||| || | | Sbjct 225 GGTTGACAGAACCGTCTAGCTCACAAGTATTCAAG-AATAAGAG---ACAA---GT-G-G 275 Query 498 ATTGATGCTCATATGAATTTATCTCCATGGGACACTTCTCTTGTG-CC-C-TCACACTTC 554 | ||||||||||||||||||||| ||| |||||||||||||||| || | |||||||| Sbjct 276 -TCGATGCTCATATGAATTTATCTTCATTGGACACTTCTCTTGTGCCCACAACACACTTC 334 Query 555 ACTGATTGCTTATTCGATGATCCTGCCATTGCGCATACATCACATCTTCTCCGTAATGGT 614 ||||||||||||||| || ||||||| ||||||| |||||||||| ||||| || | Sbjct 335 ACTGATTGCTTATTC---GACCCTGCCAATGCGCATTCATCACATCTCCTCCG---TGCT 388 Query 615 CGAAATTATACTGAGGAGCAATGCAATCCTGTTTCATCTTTTGGTTTGCCACTGGCTCAT 674 ||||||||||| | ||| | ||||| | | | ||||||||||| ||| | | Sbjct 389 CGAAATTATAC--A-GAG-GA-GCAAT-C----T-A----TTGGTTTGCCAGTGG-T--T 430 Query 675 CACGGGAGCTCTTTTAATCTTGACACCATTA-ATAAAGTTAGCAACGTGCCCGAGTTCAT 733 || |||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||| Sbjct 431 CATGGGAGCTCTTTTAATCTTGACACCATTAGA-AAAGTTAGCAACTTGCCCGACTTCAT 489 Query 734 GGTTCAGCTTTATGGTCAGGGAATTTCAACATCATTTGAAACGGC-TCCTTCTTTTAATA 792 ||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||| Sbjct 490 GGTTCAGCTTTATAATGAGGGATTTTCAACATCATTTGAAAC-GCTTCCTTCTTATAATA 548 Query 793 GTGGTCAAGAGAGTACTACGCTATCCTTTGGCCAAACCT--TC-AGTAATACTGACAGGA 849 ||||||||||||| | |||||||||||||||||||||| | |||| || ||||| || Sbjct 549 GTGGTCAAGAGAG--C-ACGCTATCCTTTGGCCAAACCTGCACTAGTAGTATTGACAAGA 605 Query 850 GCTTCATCTTGCCAGG-GCAGTTCGCTAGCAAAACAGATGGAAATTTCATTCGAAACTTC 908 |||||||||| ||||| || ||||||||||| |||||||||||||||||| |||||| Sbjct 606 GCTTCATCTTCCCAGGACCA-TTCGCTAGCAAGGCAGATGGAAATTTCATTCAAAACTTT 664 Query 909 AATAATGAAGGTGTTGGTGTCGTACCGATTGGTGATTA-TTATGACAAAGGAGATGAAAA 967 | |||||||||| ||||| ||||||| | ||||| || || |||||||||||||| ||| Sbjct 665 AGTAATGAAGGTATTGGTCTCGTACCAACCGGTGA-TATTTTTGACAAAGGAGATGGAAA 723 Query 968 TGTCCTGTCAACATTTCATCCGTTGGAGAAAGGAGTAGAAAACTTTCTATCGATGGGTCA 1027 |||| |||||||||||||||| || |||||||||||||||||||| | | ||||||||| Sbjct 724 TGTCTTGTCAACATTTCATCCATTTCAGAAAGGAGTAGAAAACTTTGTTTTGATGGGTCA 783 Query 1028 GTCTCTTCAAAAGGCTGATTGTAATATCTTCTCAGTGAGTTCCTCCTATAATAAGGGACA 1087 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 784 GTCTCTTCAAAAGGCTGATTGCAATATCTTCTCAGTGAGTTCCTCCTATAACAAGGGACA 843 Query 1088 GGAGAACTTTATGCCTCTTCTCTCTTGTGAAC-AAGTACCT-GAATACGATTTCATGACC 1145 |||||||||||||||||||| ||||||| || || | ||| ||| ||| |||||||||| Sbjct 844 AGAGAACTTTATGCCTCTTCTATCTTGTG-ACAAATTGCCTGGAA-ACGTTTTCATGACC 901 Query 1146 GAATCTAACT-ATCACAATGAAAATGCCAATGCGTTGTC-AGCGGGACAGTCCT-CATTT 1202 | ||| || | || |||| ||||||| |||||| ||||| || |||| ||| || ||||| Sbjct 902 GGATC-AAATAATTACAAAGAAAATGTCAATGCCTTGTCAAG-GGGAGAGT-CTCCATTT 958 Query 1203 ACGGAAGGCGGTGAGATGACATTTATGGTTTCTAGCCAAGAGAGAGCAGGTCAAAGCAAT 1262 |||||||||||||||||| |||||||||||||||||| | |||| | | || | | Sbjct 959 ACGGAAGGCGGTGAGATGGCATTTATGGTTTCTAGCC---A-AGAG-A-G---AA-C-A- 1006 Query 1263 GATCAAATCAGGCGCGAGGATGATAGAAGCGAGACCCTATCTTTTGGAGATTGTCAGAAA 1322 |||||||| |||| ||| | ||||||||| ||||||||||||||||||||| ||||||| Sbjct 1007 GATCAAATTAGGCACGA-G--GATAGAAGCCAGACCCTATCTTTTGGAGATTATCAGAAA 1063 Query 1323 GAAACCGCAATGGGATCATCAGTCCGTGTTAGT-AACAATTATGAGAACTTCAGCCATGA 1381 ||| || | ||||||||| |||||||||||| | ||| ||||||||||||||||||||| Sbjct 1064 GAATCCACGATGGGATCAGCAGTCCGTGTTA-TCAACGGTTATGAGAACTTCAGCCATGA 1122 Query 1382 CCCTGCAATTACTAAAGATCCTCTTCATATCGAAGCAGAGGAAAATATGTCTTTTGAATG 1441 |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1123 CCCTGCAATTGCTAAAGATCCTCCTCATATGGAAGCAGAGGAAAATATGTCTTTTGAATT 1182 Query 1442 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAATTAAAGA 1501 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1183 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAAGTAAAGA 1242 Query 1502 TACAAAGACAGCTAAGAAGGGTTCTACAAACACATTTCCTTCAAATGTTAAGTCCTTGTT 1561 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | Sbjct 1243 TACCAAGACAGCTAAGAAGGGTTCTACAAATACATTTCCTTCAAATGTTAAGTCATTGCT 1302 Query 1562 GTCAACAGGAATCTTTGATGGAGTTACTGTGAAGTACTATTCGTGGTCACGTGAGCAGAG 1621 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1303 GTCAACAGGAATGTTTGATGGGGTTACTGTGAAGTACTATTCGTGGTCACGTGAGGTCAG 1362 Query 1622 AAATCTCAAAGGGATGATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGTAAAC- 1680 |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1363 AAATCTCAAAGGAATCATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGT-AACT 1421 Query 1681 TTAATAAAGTTCTCAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCACC 1740 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1422 TTAATAGAGTTCTTAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCATC 1481 Query 1741 CAAATAACCACATATACTTTGAAAATGGAAAGACCATTTATGGCGTTGTTCAAGAACTGA 1800 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1482 CAAATAACCACATATACTTTGAGAATGGAAAGACCATTTATGGCGTTGTTCAAGAGCTGA 1541 Query 1801 AGAATACACCTCAGGAGAAGTTGTTTGATGCTATTCAAAATGTTACAGGATCTGACATCA 1860 |||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | |||| Sbjct 1542 AGAATACACCTCAGGAAAAGTTGTTCGATGCTATTCAAAATGTAACAGGATCTTATATCA 1601 Query 1861 ACCATAAGAATTTCAACACATGGAAAGCTTCATATCACGTTGCTAGACTTGAACTTCAGC 1920 ||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||| Sbjct 1602 ACCATAAGAATTTCAACACCTGGAAAGCTTCATATCATGTTGCCAGCCTTGAACTTCAGC 1661 Query 1921 GTATCTATGGGAAGGATGATGTCACTTTGGCATCTTGAGAAGACGAGTTATCAACTGGCA 1980 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1662 GTATCTATGGGAAGGATGATGTCACTTTGGCCTCTTGAGAAGACGAGTTATCAACTGGCA 1721 Query 1981 GGCTTTTTGTCGTAAGTGAAGTCTGGGTGAAGTCTAGGTCTCTTACTAAAGTATATAATC 2040 ||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| | Sbjct 1722 GGCTTTTTGTCGTAAGTGATGTCTGGG-GAAGTCTAGTTCTCTTACTAAAGTATATAAAC 1780 Query 2041 TACTGCAAGAACTCCAAGTTCTTAGCTTTTATGAGACTTAATGTAGCGCATTGCTTGCTC 2100 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1781 TACTGCAAGAACTCCAAATTCTTAGCTTTTATGAGACTTTATGTAGCGCATTGCTTGCTC 1840 Query 2101 TTATTCTGGCAAACCAATACTATCAAAAATGttttt 2136 |||||||||||||||||||||||||||||||||||| Sbjct 1841 TTATTCTGGCAAACCAATACTATCAAAAATGTTTTT 1876 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80560868175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5