BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13710.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940836 jgi|Araly1|940836|scaffold_601380.1 1694 0.0
> Ahg940836 jgi|Araly1|940836|scaffold_601380.1
Length=1067
Score = 1694 bits (917), Expect = 0.0
Identities = 992/1029 (96%), Gaps = 2/1029 (0%)
Strand=Plus/Plus
Query 90 TCCGTTGTTGCATAAGTGCTATGGATCTCGCGTCGAATCTTGGTGGGAAGATCGATAAAT 149
|||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 1 TCCGTTGTTGCACAAGTGCCATGGATCTCGCGTCGAATCTAGGTGGCAAGATCGATAAAT 60
Query 150 CCGATGTTCTCACCGCCGTCGAAAAGTATGAGCAATATCATGTCTTCCATGGAGGAAACG 209
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGATGTTCTCACAGCCGTCGAAAAGTATGAGCAATATCATGTCTTCCATGGAGGAAACG 120
Query 210 AGGAAGAGAGAAAAGCCAATTATACTGACATGGTTAATAAGTACTATGACCTTGCTACTA 269
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGAAGAGAGAAAAGCAAATTACACTGACATGGTTAATAAGTACTATGACCTTGCTACTA 180
Query 270 GCTTTTATGAGTACGGATGGGGAGAATCCTTCCATTTTGCACAAAGATGGAAAGGAGAAT 329
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GCTTTTATGAGTATGGATGGGGAGAATCCTTCCATTTTGCACACAGATGGAAAGGAGAAT 240
Query 330 CGCTTCGAGAGAGTATTAAGCGACACGAGCACTTTCTTGCTCTTCAGCTTGGCATCCAAC 389
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CGCTTCGAGAGAGTATTAAGCGACACGAGCACTTTCTTGCTCTTCAGCTTGGCATCAAAC 300
Query 390 CAGGACAAAAGGTACTGGATGTAGGATGTGGAATTGGTGGACCGTTGAGGGAAATTGCAA 449
||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 301 CAGGACACAAGGTACTGGATGTAGGATGTGGAATTGGTGGACCGCTGAGAGAAATTGCAC 360
Query 450 GATTCAGCAATTCAGT-TGTTACCGGGCTCAACAATAACGAATACCAGATCACCAGAGGC 508
| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTCAGCAATTCA-TCTGTTACCGGGCTCAACAATAACGAATACCAGATCACCAGAGGC 419
Query 509 AAGGAACTAAACCGACTTGCAGGTGTCGACAAGACATGTAACTTTGTCAAGGCTGACTTC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGGAACTAAACCGACTTGCAGGTGTCGACAAGACATGTAACTTTGTCAAGGCTGACTTC 479
Query 569 ATGAAGATGCCATTCCCGGAAAACAGTTTCGATGCAGTTTATGCAATAGAAGCAACTTGC 628
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 480 ATGAAGATGCCATTCCCTGAAAACAGTTTTGATGCAGTTTATGCAATAGAAGCAACCTGC 539
Query 629 CATGCACCTGATGCGTATGGATGCTACAAAGAGATCTACAGAGTGCTAAAGCCTGGGCAA 688
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 CACGCACCTGATGCGTATGGATGCTACAAAGAGATCTACAGAGTGCTAAAGCCCGGGCAA 599
Query 689 TGTTTTGCTGCCTATGAGTGGTGTATGACTGATGCATTTGACCCTGATAACGCCGAACAT 748
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 600 TGTTTTGCTGCCTATGAGTGGTGCATGACTGATGCATTTGACCCTGATAACGCTGAACAT 659
Query 749 CAGAAAATAAAGGGAGAGATAGAGATTGGAGATGGTCTTCCTGACATTAGGCTGACTACA 808
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 CAGAAGATAAAGGGAGAGATAGAGATTGGAGATGGTCTGCCTGACATTAGGCTGACTACA 719
Query 809 AAATGCCTCGAAGCTCTGAAGCAGGCCGGTTTTGAAGTGATATGGGAAAAGGATCTGGCC 868
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 AAATGCCTTGAAGCTCTGAAGCAGGCCGGTTTTGAAGTAATATGGGAAAAGGATCTGGCC 779
Query 869 AAGGACTCGCCGGTCCCATGGTACTTACCTCTTGACAAAAATCATTTCTCACTCAGTAGC 928
|||||||||||| |||| |||||||| ||||| |||||||||||||| || || ||||||
Sbjct 780 AAGGACTCGCCGATCCCTTGGTACTTGCCTCTGGACAAAAATCATTTTTCGCTTAGTAGC 839
Query 929 TTCCGCCTTACAGCTGTTGGACGATTCATAACCAAAAACATGGTCAAGATCCTTGAATAC 988
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCCGCCTAACAGCTGTTGGACGATTCATAACCAAAAACATGGTCAAGATCCTTGAATAC 899
Query 989 ATAAGACTTGCACCTCAAGGAAGCCAAAGGGTCTCAAATTTCCTGGAGCAGGCTGCGGAA 1048
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATAAGACTCGCACCTCAAGGAAGCCAAAGGGTCTCAAATTTCCTGGAGCAGGCTGCGGAA 959
Query 1049 GGATTAGTCGACGGTGGAAGGAGAGAGATTTTCACGCCAATGTATTTCTTCTTGGCCCGG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGATTAGTCGACGGTGGAAGGAGAGAGATTTTCACGCCAATGTATTTCTTCTTGGCCCGG 1019
Query 1109 AAGCCAGAG 1117
|||||||||
Sbjct 1020 AAGCCAGAG 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5