BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13720.1 Length=1070 Score E Sequences producing significant alignments: (Bits) Value Ahg488193 jgi|Araly1|488193|fgenesh2_kg.6__1327__AT5G13720.1 1439 0.0 > Ahg488193 jgi|Araly1|488193|fgenesh2_kg.6__1327__AT5G13720.1 Length=1011 Score = 1439 bits (779), Expect = 0.0 Identities = 919/986 (93%), Gaps = 12/986 (1%) Strand=Plus/Plus Query 41 GAAAAACCAACTTCAACCACACACCACATATTTCTCTCCCGCCTAATCCTCCGCGTTCCC 100 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAAAAACAACTTCATCCACACACCACATATTTCTCTCCCGCCTAATCCTCCGCGTTCCC 60 Query 101 AAGCCGACGCGCCGATCTTTCTTCTACTACTTGTCCTCCGGCAATAACAAACTAAC-CAT 159 |||||||| ||| ||||||||||||||||||||||||||||| | | || | ||| | | Sbjct 61 CAGCCGACGGGCCTATCTTTCTTCTACTACTTGTCCTCCGGCACTTATAACCAAACTC-T 119 Query 160 TTCGAAAAGTAATTATCTATGGCTCTCTCCTCGTTGATCTCAGCCACTCCGCTCTCCCTT 219 || || | || |||||||||||||||| |||||||||||||||||||||| ||||| || Sbjct 120 TTAGACTACTAGTTATCTATGGCTCTCTGCTCGTTGATCTCAGCCACTCCGATCTCCGTT 179 Query 220 TCGGTGCCGAGATATCTCGTGTTACCCACGCGCCGCCGTTTCCACTTGCCGTTAGCAACT 279 |||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||| Sbjct 180 TCGGTGCCGAGATACCTCGTCTTACCCACGCGCCGCCGTTTTCACATGCCGTTAGCAACT 239 Query 280 CTTGACTCATCG--C-CTCCAGAGTCATCCGCATCATCATCGATTCCTACCTCGATTCCC 336 |||| ||||||| | |||| |||||||| ||||||||||||| ||||||||||||||| Sbjct 240 CTTGGCTCATCGTCCTCTCCGGAGTCATCGGCATCATCATCGACCCCTACCTCGATTCCC 299 Query 337 GTCAACGGAAACACGTTACCTAGTTCTTA-CG--GAACTCGCAAAGACGACAGCCCGTTT 393 |||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| ||| Sbjct 300 GTCAACGGGAACACGTTACCTAGTTCTTACCGAACAACTCCCAAAGACAACAGCCCATTT 359 Query 394 GCTCAGTTCTTTCGCTCCACCGAATCCAACGTTGAGAGGATAATATTTGATTTCCGGTTC 453 ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 GCTAAGTTCTTTCGTTCCACCGAAGCCAACGTTGAGAGGATAATATTTGATTTCCGGTTC 419 Query 454 CTAGCGCTTTTGGCAGTAGGAGGTTCGCTGGCTGGTTCGCTACTCTGCTTTCTCAATGGG 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CTAGCGCTTTTGGCAGTAGGAGGTTCGCTGGCTGGTTCGCTACTCTGCTTTCTCAATGGG 479 Query 514 TGTGTCTACATAGTGGAGGCATATAAAGTCTACTGGACTAACTGTTCAAAAGGCATCCAT 573 |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 480 TGTGTCTATATAGTGGAGGCATATAAAGTCTACTGGACTAACTGTGCAAAAGGAATCCAT 539 Query 574 ACCGGCCAAATGGTTTTACGCCTAGTCGAAGCTATCGATGTTTATCTAGCTGGGACTGTG 633 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 540 ACCGGCCAAATGGTTTTACGCCTAGTCGAAGCTATCGATGTTTATCTGGCTGGGACTGTT 599 Query 634 ATGTTAATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTCACTCGCCTCATGATGTT 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATGTTAATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTCACTCGCCTCATGATGTT 659 Query 694 CCACCGGAATCCGATCGTGCCCTTAGATCCTCTTCCCTCTTTGGTATGTTTGCAATGAAG 753 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 660 CCTCCGGAATCCGATCGTGCCCTTAGATCCTCTTCTCTCTTTGGTATGTTTGCAATGAAG 719 Query 754 GAGAGACCAAAATGGATGAAGATCAGCTCACTTGATGAGCTTAAAACCAAAGTGGGACAT 813 ||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 720 GAGAGGCCGAAATGGATGAAGATTAGCTCACTTGATGAGCTGAAAACCAAAGTGGGACAT 779 Query 814 GTCATTGTTATGATTCTGCTAGTGAAGATGTTCGAGAGAAGCAAGATGGTTACTATCGCC 873 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GTCATTGTTATGATTCTTCTAGTGAAGATGTTCGAGAGAAGCAAGATGGTTACTATCGCC 839 Query 874 ACCGGTCTAGATTTGCTTAGTTATTCCGTTTGCATCTTCTTGTCCTCTGCTTCTCTGTAT 933 |||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||| Sbjct 840 ACCGGTCTTGATTTGCTCAGTTATTCCGTTTGCATCTTCTTGTCTTCTGCTTCACTTTAT 899 Query 934 ATCCTCCATAATCTCCACAAAGGAGAGACATGAACCCAT--ATTATGTACAGACCCAATA 991 |||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| Sbjct 900 ATCCTCCATAATCTCCACAAAGGAGAGACATGAATCCATTCAT-ATGTACAGACCCAAT- 957 Query 992 TATCCAATATATGTGTTTACTCTGtt 1017 |||||||||||| ||||| ||||||| Sbjct 958 TATCCAATATATATGTTTGCTCTGTT 983 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39838448265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5