BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13770.1
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940842 jgi|Araly1|940842|scaffold_601386.1 2924 0.0
Ahg488201 jgi|Araly1|488201|fgenesh2_kg.6__1335__AT5G13780.1 307 2e-82
> Ahg940842 jgi|Araly1|940842|scaffold_601386.1
Length=1872
Score = 2924 bits (1583), Expect = 0.0
Identities = 1779/1875 (95%), Gaps = 7/1875 (0%)
Strand=Plus/Plus
Query 19 CTTCACACACACAGATACA--CATGGCCATCGCGAGCGGGTCATGGGTAGCCACTGTGAA 76
||||||||||||| | ||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 CTTCACACACACACACACACTCATGGCCATCGCGAGCGGGTCGTGGGTAGCCACCGTGAA 60
Query 77 CCACCATGCTAATCCCCACAGCTTCACTTCTCCGACCAAACCCATTTTCTTTCTTTCTCA 136
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 61 CCACCATGCAAATCCCCACAGCTTCACCTCTCCGACCAAACCCATTTTCTTTCTTTCCCA 120
Query 137 AAAGCCTCACAATTTCCATGTCTGCTCGTCTCGATGCTCTATGGTTCTTGAGGAAGATGA 196
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AAAGCCTCACAATTTCCATGTCTGCTCCTCTCGATGCTCTATGGTTCTTGAGGAAGATGA 180
Query 197 AAAGAAGTCACCGAGTCCTAAAGAAGACAAGTGGCCATTTTTTGAACCTGGTCCGAATGA 256
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 181 AAAGAAGTCACCGAGTCCCAAAGAAGACAAGTGGCCATTTCTTGAGCCTGGTCCGGATGA 240
Query 257 CCTTAACCGGGTCTTATCCAGGTTTCTCCGAGACCCGGAAACTCGGAAACTTTCTTCTGA 316
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CCTTAACCGGGTCTTATCCAGGTTTCTCCGAGACCTGGAAACTCGGAAACTTTCTTCTGA 300
Query 317 ATTCTACGAGAAAGCTAAGGAGAACTCTGAGTTGAGAACGACCAAGCATCTGAT-AAGTT 375
|||||||||||| || |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 301 ATTCTACGAGAAGGCAAAGGAGAACTCTGAGTTGAGGACGACCAAGCATCTGATCAA-TT 359
Query 376 ACTTGGTGAGTTCCAAGAGTTGGGACTTGCTTGTTTCTG-TTTGTGAGGATCTCAGGGAA 434
|||||||||||||||||| |||| ||||||| || || | ||||||||||||||||||||
Sbjct 360 ACTTGGTGAGTTCCAAGAATTGGAACTTGCTCGTCTC-GCTTTGTGAGGATCTCAGGGAA 418
Query 435 CATAAAGCATTGCCTGATGGGCAAACGTGTTCGAATCTGATCAGGAGTTGCATCAGAGAT 494
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 419 CATAAAGCATTGCCTGATGCACAAACGTGTTCGAATCTGATCAGAAGTTGCATCAGAGAG 478
Query 495 AGGAAATTCCGAATCACACATTGCTTGCTTAGCGTGTTTAGATCAGACAAATCATTGGCG 554
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGAAAATTCCGAATTACACATTGCTTGCTTAGCGTGTTTAGATCAGACAAATCATTGGCG 538
Query 555 GTATCTGCATCTGATGCAGCGATGAAAGGCTTTAACAAACTCCAGATGTATAGTAGCACC 614
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGTCTGCATCTGATGCAGCGATGAAAGGCTTTAACAAACTCCAGATGTATAGTAGCACG 598
Query 615 ATTCAAGTATTTGATAGGTTGAAACAATCTGTGGGAGTTGAGCCAAGCCCGGGTTGTTAT 674
|||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 599 ATTCAAGTGTTTGATAGGTTGAAACAATCTGTCGGAGTTGAGCCAAGCCCGAGCTGTTAT 658
Query 675 TGCAGGATAATGGAGGCTCATGAGAAGATTGGTGAAAATCACAAGGTGGTTGAGTTGTTC 734
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 659 TGCAGGATAATGGAGGCTCATGAGAAGATTGGTGACAATCAAAAGGTGGTTGAGTTATTT 718
Query 735 CAAGAGTTTAAGAGTCAGAGGTTGAGTTTCTTGGCCAAGGAATCAGGCTCTATCTACACG 794
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CAAGAGTTTAAGAGTCAGAGGTTGAGTTTCTTGGCCAAGGAATCAGGCAGTATCTACACG 778
Query 795 ATTGTATGCTCGTCCCTTGCAAAATCAGGACGTGCATTCGAAGCTCTAGAGGTTTTGGAG 854
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 779 ATTGTATGCTCGTCCCTTGCAAAATCAGGACGGGCATTCCAAGCTCTAGAGGTTTTGGAG 838
Query 855 GAGATGAAAGATAAAGGAATTCCGGAGAGTAGTGAATTGTACTCTATGCTGATCCGTGCA 914
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 839 GAGATGAAGGATAAAGGAATTCCAGAAAGTAGTGAATTGTACTCTATGCTGATCCGTGCC 898
Query 915 TTTGCGGAAGCGCGGGAGGTTGTAATAACCGAGAAGCTATTCAAAGAAGCAGGAGGGAAG 974
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 TTTGCGGAAGCACGAGAGGTTGTAATAACCGAGAAGCTTTTCAAAGAAGCAGGAGGGAAG 958
Query 975 AAACTGTTAAAGGATCCTGAAATGTGTTTGAAGGTTGTACTCATGTATGTCCGAGAAGGA 1034
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 AAACTGTTGAAGGATCCTGAAATGTGTTTGAAGGTTGTACTGATGTATGTCCGAGAAGGA 1018
Query 1035 AATATGGAGACAACTCTAGAGGTTGTGGCGGCGATGAGAAAGGCTGAGTTAAAGGTCACT 1094
|| ||||||| |||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1019 AAAATGGAGAGAACTCTAGAGGTTGTGGCAGCGATGAGAAAGGCCGAATTAAAGGTCACT 1078
Query 1095 GATTGCATACTCTGTGCGATTGTGAATGGATTCAGTAAGCAAAGAGGCTTTGCTGAAGCA 1154
|| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1079 GACTGCATACTCTGCGCGATTGTGAATGGATTCTGTAAGCAAAGAGGTTTTGCTGAAGCA 1138
Query 1155 GTTAAGGTTTATGAATGGGCTATGAAGGAAGAATGTGAGGCTGGGCAAGTGACTTATGCA 1214
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1139 ATTAAGGTTTATGAATGGGCTATGAAGCAAGAATGTGAGGCTGGGCAAGTGACTTACGCA 1198
Query 1215 ATAGCCATCAATGCATACTGTCGGCTTGAGAAGTACAATAAGGCTGAGATGTTGTTTGAT 1274
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1199 ATAGCCATCAATGCATACTGTCGGCTTGAGAAGTACGATAAGGCTGAGATGTTGTTTGAT 1258
Query 1275 GAGATGGTGAAGAAGGGGTTTGATAAGTGTGTTGTTGCATACTCAAACATAATGGATATG 1334
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1259 GAGATGGTGAAGAAGGGGTTTGACAAATGTGTTGTTGCATATTCAAACATAATGGATATG 1318
Query 1335 TATGGGAAAACACGGAGACTAAGCGATGCAGTGAGACTCATGGCTAAGATGAAACAAAGA 1394
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 TATGGGAAAACACAGAGGCTAAGCGATGCAGTGAAACTCATGGCTAAGATGAAACAAAGA 1378
Query 1395 GGGTGTAAACCCAACATTTGGATTTACAATTCCTTGATTGATATGCATGGAAGGGCTATG 1454
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1379 GGGTGTAAACCCAACATTTGGATTTACAATTCCTTAATTGATATGCATGGAAGGGCTAAG 1438
Query 1455 GACTTAAGGAGGGCTGAAAAGATATGGAAAGAGATGAAGAGGGCGAAGGTGTTGCCGGAC 1514
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1439 GACTTAAGGCGGGCTGAAAAGATATGGAAAGAGATGAAGAGGGCGAAGGTGTTGCCAGAC 1498
Query 1515 AAGGTGAGTTACACTAGTATGATCAGTGCATATAACAGATCAAAAGAGTTGGAGAGATGT 1574
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct 1499 AAGGTGAGTTACACTAGTATGATCAGTGCATATAATAGAGCAAAAGAGTTGGAGAAATGT 1558
Query 1575 GTGGAGCTTTACCAGGAGTTTAGGATGAACAGAGGAAAGATTGATAGGGCCATGGCAGGA 1634
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1559 GTGGAGCTTTACCAGGAGTTTAGGATGAACAGAGGAAAGATCGATAGGGCTATGGCAGGA 1618
Query 1635 ATCATGGTCGGTGTATTCTCCAAAACCAGTAGGATTGATGAGCTAATGAGGCTGTTGCAG 1694
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1619 ATAATGGTAGGTGTATTCTCCAAAACCAGTAGGATTGATGAGCTGATGAGGCTGTTGCAG 1678
Query 1695 GACATGAAAGTTGAAGGAACCAGGCTTGATGCTAGGCTTTATTCCTCAGCTTTGAATGCT 1754
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1679 GACATGAAAGTTGAAGGAACCAGGCTTGATGCGAGGCTTTATTCCTCAGCTTTGAATGCT 1738
Query 1755 CTGCGTGATGCTGGTCTCAATTCCCAGATCAGATGGCTACAGGAAAGCTTTGACGCTGCA 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1739 CTGCGTGATGCTGGTCTCAATTCCCAGATCAGATGGCTACAGGAAAGCTTTGATGCTGCA 1798
Query 1815 CAAACTAGTACTTCAAAATATTCGAATACAAAGAACACAGGAACTTTAAGTTGAAAGGGA 1874
||||||||| ||||| |||||||||||| ||||||||| ||||| | ||||||||||||
Sbjct 1799 CAAACTAGTGTTTCAAGATATTCGAATACGAAGAACACAAGAACTATCAGTTGAAAGGGA 1858
Query 1875 AAACTGTACAAGCCA 1889
|| ||||||||||||
Sbjct 1859 AA-CTGTACAAGCCA 1872
> Ahg488201 jgi|Araly1|488201|fgenesh2_kg.6__1335__AT5G13780.1
Length=969
Score = 307 bits (166), Expect = 2e-82
Identities = 203/219 (93%), Gaps = 9/219 (4%)
Strand=Plus/Minus
Query 1839 AATACAAAGAACACAGGAACTTTAAGTTGAAAGGGAAAACTGTACAAGCCAAGATTATTT 1898
||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 969 AATACGAAGAACACAAGAACTTTAAGTTGAAAGGG-AAACTGTACAAGCCAAGA-T-TTT 913
Query 1899 TTCTTGTAATTAAATGTACTATATTGCCAATAGAGATCTGCTATCTTGCAAATAGAAGAT 1958
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TT-TTGTAATTAAATGTAATATATTGCCAATAGAGATCTGCTATCTTGCAAATAGAAGAT 854
Query 1959 TTCCAGCTTAAGTTGTAAAGCCTTAATGAAAGCTTGGAATTTCCAAAA--TGATACATC- 2015
|||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 853 TTCCAGCTGAAGTTGTAAAGCCTTAATGAAAGCTTGGAATTTCCAAAACATAATACATAG 794
Query 2016 aaaaaaaGGAACGGCTAAATTTTCAATACAACCAAAGAA 2054
||||||| ||||||||||||| ||||||||||||||||
Sbjct 793 AAAAAAAA-AACGGCTAAATTT-CAATACAACCAAAGAA 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77247016860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5