BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13800.2
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488204 jgi|Araly1|488204|fgenesh2_kg.6__1338__AT5G13800.2 2604 0.0
> Ahg488204 jgi|Araly1|488204|fgenesh2_kg.6__1338__AT5G13800.2
Length=1701
Score = 2604 bits (1410), Expect = 0.0
Identities = 1626/1725 (94%), Gaps = 35/1725 (2%)
Strand=Plus/Plus
Query 28 CCATTTGATGAAGCTTCTCGC-TTCTGGAATTTGAAAAGGAACTTGTTATGGAGATAATC 86
|||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||||
Sbjct 1 CCATTTGATGAAGCTTCTTGCTTTC-GGAATTTGAAAAGGAATTTGTTATGGAGATAATC 59
Query 87 TCACTGAACG-TTGTGCCCCAGTGCTCTGTGGTTACTTGGAGTAGTAAATTAGCAACGAA 145
|||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 60 TCACTGAA-GTTTGTGCCCCAGTGCTCTGTGGTGACTTGGAGTAGTAAATTAGCCACGAA 118
Query 146 AAGATTGGTCCCAAATCGGTCAAGTTTGTTATTCTCAGGGGTCAAAAAATCCAGACTTGT 205
|||||||||||||||||| |||| ||||||||| || ||||||| |||||||||||||||
Sbjct 119 AAGATTGGTCCCAAATCGATCAAATTTGTTATTATCGGGGGTCAGAAAATCCAGACTTGT 178
Query 206 GATTCGAAGTGGAAATTCCGATGGTTATGTTGTTGGTGAGAATGATGACTTGGGTCGTAT 265
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 179 GATTCGAAGTGGAAATTCCGATGGTTATGTGGTTGGTGAGAATGATGACTTGGGTAGCAT 238
Query 266 AGCCAGAAGAGGAGAATCAACGTCAAAGGTTTTGATTCCTGGTTTGCCTGATGAATCAAA 325
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 239 AGCCAGAAGAGGAGAATCAACATCCAAGGTTTTGATTCCTGGATTGCCTGATGAATCAAA 298
Query 326 TGGTGAAATTGCTGCTCGAATCAGTCATTCTCACTGCGAGTGGAAGCCCAAGCTTAGAGT 385
|||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 299 TGGTGAGGTTGCTGCTCGAATCAGACATTCTCACTGCGAGTGGAAACCCAAGCTTAGAGT 358
Query 386 ACATTATGAGAAAGCCGGTTGTGACAATCTCGATGCTCCTGCGGTGTTGTTTCTTCCTGG 445
||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||
Sbjct 359 ACATTATGAGAAAGCGGGTTGTGATAACCTCGATGCTCCTGCCGTGTTGTTTCTTCCTGG 418
Query 446 CTTTGGCGTTGGTTCATTTCACTATGAGAAGCAGCTTACCGATTTGGGAAGGGATTATCG 505
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTTGGTGTTGGTTCATTTCACTATGAGAAGCAGCTTACCGATTTGGGAAGGGATTATCG 478
Query 506 AGTATGGGCTATTGATTTTCTTGGACAGGGTTTATCTCTCCCTACTGAAGATCCTACTAC 565
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 479 AGTATGGGCTATTGATTTTCTTGGGCAGGGTTTATCTCTCCCCACTGAAGATCCTACTAC 538
Query 566 CATGACTGAAGAAACCAGTTCCTCGGAAGATAAGGAACCATTTTGGGGATTTGGTGACAA 625
||||||| | || | ||||||||||| |||||||||||||||||||||||| ||
Sbjct 539 CATGACT-------CAAG-T-CTCGGAAGATATGGAACCATTTTGGGGATTTGGTGATAA 589
Query 626 AACTGAACCGTGGGCTGATCAACTTGTATTCTCTCTGGATCTCTGGAGGGATCAAGTTCA 685
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 590 AACTGAACCGTGGGCTGATCAACTTGTATTCTCCCTGGATCTCTGGAGGGATCAAGTTCA 649
Query 686 GTATTTTGTAGAAGAGGTTATCGGTGAGCCTGTGTACATTGCAGGGAACTCACTTGGAGG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GTATTTTGTAGAAGAGGTTATCGGTGAGCCTGTGTACATTGCAGGGAACTCACTTGGAGG 709
Query 746 GTATGTAGCTCTCTACTTTGCAGCAACCCATCCTCACCTGGTTAAGGGTGTTACCTTGCT 805
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 710 GTATGTAGCTCTCTACTTTGCAGCAACCCATCCTCACCTGGTAAAGGGTGTTACCTTACT 769
Query 806 TAATGCAACACCTTTCTGGGGTTTCTTCCCTAATCCAGTAAGATCCCCAAAGCTAGCACG 865
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 770 TAATGCAACACCTTTTTGGGGGTTCTTCCCTAATCCAGTAAGATCCCCAAAGCTAGCACG 829
Query 866 TCTCTTTCCATGGCCCGGAGCATTCCCTCTGCCGGAAAGAGTGaaaaaaaTCACAGAATT 925
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 830 TCTCTTTCCATGGCCCGGAGCATTCCCTCTGCCGGCAAGAGTGAAAAAAATCACAGAATT 889
Query 926 GGTGTGGCAAAAGATAAGTGATCCTGAAAGCATAGCTGAGATACTTAAACAGGTCTACAC 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGTGTGGCAAAAGATAAGTGATCCTGAAAGCATAGCTGAGATACTTAAACAGGTCTACAC 949
Query 986 AGACCATTCTATCAATGTGGATAAAGTATTCTCACGTATTGTGGAGGTCACACAGCATCC 1045
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 950 AGACCATTCTACCAATGTGGATAAAGTATTTTCACGTATTGTGGAGGTCACACAGCATCC 1009
Query 1046 GGCTGCTGCAGCATCGTTTGCTTCAATCATGCTTGCTCCTGGTGGAGAGCTATCTTTCTC 1105
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1010 GGCTGCTGCAGCATCGTTTGCTTCAATCATGCTTGCTCCTGGTGGACAGCTATCTTTCTC 1069
Query 1106 CGAAGCTTTATCTAGGTGTAAGGAAAACAATGTTCAGATATGTCTCATGTATGGAAGAGA 1165
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1070 CGAAGCTTTATCTAGGTGTAAGAAAAACAACGTTCAGATATGTCTCATGTATGGAAGAGA 1129
Query 1166 AGATCCATGGGTGAGACCGTTATGGGGAAAGAAGATAAAGAAGGAAATCCCCAACGCTCC 1225
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1130 AGATCCATGGGTGACACCAATATGGGGAAAGAAGATAAAAAAGGAAATCCCCAATGCTCC 1189
Query 1226 ATACTACGAGATCAGCCCAGCGGGTCACTGCCCACACGATGAAGTCCCTGAGGTGGTGAA 1285
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 ATACTACGAGATCAGCCCTGCGGGTCACTGCCCACACGATGAAGTCCCTGAGGTGGTGAA 1249
Query 1286 CTATCTGATGCGCGGGTGGATCAAGCACCTGGAGTCTGGTGGTTTTGAAGCGCTCCCGCT 1345
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1250 CTATCTGATGCGTGGGTGGATCAAGCACCTGGAGTCTGGTGGTTTTGAAGCACTCCCGCT 1309
Query 1346 TTTGGAGGACACTGAAGAAGATTGGGAGGAGTCCAGGATTGGTAGAGAAATTGAGTTCCC 1405
|||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1310 TTTGGACAACACTGAAGAAGATTGGGAG---TCCAGCATTGGTAGAGAAATAGAGTTCCC 1366
Query 1406 GAGAGATGGTTGGAAAAAAGCAGTGAATCTGTGGTTATATGGGTCAAACTATACGTACTG 1465
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1367 GAGAGATGGTTGGAAAAAAGCAGTGAATCTGTGGTTGTATGGGTCAAACTATTCGTTCTG 1426
Query 1466 GAGAGGAGTTAGAGAATCTTTCAGATCCAGTTTTATAAGGGTGTTTGGAGGGAAGTCTGC 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GAGAGGAGTTAGAGAATCTTTCAGATCCAGTTTTATAAGGGTGTTTGGAGGGAAGTCTGC 1486
Query 1526 ATAGAAGAAGCATGGAACAGTCGT---CTAGTGTAAATTAATTGTAATC-TATGTTGCAT 1581
|||||||||||||||||||||||| ||||||||||||| |||||| | |||| |||||
Sbjct 1487 ATAGAAGAAGCATGGAACAGTCGTTGTCTAGTGTAAATTAGTTGTAA-CATATGATGCAT 1545
Query 1582 CCGATGCTAGCTATATAATGTTGTCTGTAG-A-A-TCAAGTTTCTAAAATGTTCAAAAGG 1638
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1546 CCGATGCTAGCTATATAATGTTGTCTGTAGTAGAATCAAGTTTCTAAAATGTTCAAAAGG 1605
Query 1639 AAAA-GTTAGAAAAATATCTACTTGATAGTTAGTCACCTAAATCGAAGGAACTCCTTTCT 1697
|||| |||||||||||||||||||| | ||||||||| |||| |||| || ||
Sbjct 1606 AAAAAGTTAGAAAAATATCTACTTG-T-------CACCTAAATTGAAGAAACTGCTGCCT 1657
Query 1698 TGCATTGTTGTATATAATCCACAGGTTCA-GATTAATATAGGAAG 1741
|||||||||||||||||||||||| |||| | |||||| ||||||
Sbjct 1658 TGCATTGTTGTATATAATCCACAGATTCATG-TTAATAGAGGAAG 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5