BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13810.1 Length=1585 Score E Sequences producing significant alignments: (Bits) Value Ahg940846 jgi|Araly1|940846|scaffold_601390.1 1199 0.0 > Ahg940846 jgi|Araly1|940846|scaffold_601390.1 Length=854 Score = 1199 bits (649), Expect = 0.0 Identities = 792/859 (92%), Gaps = 17/859 (2%) Strand=Plus/Plus Query 317 TTCTTTGATCTAATTTCGATGGCGGGATTAGAGAAAAACGCTGATTTCTCAGGGAAGACG 376 ||||||||||| ||||||||||||||||||| ||||| | | || ||| | | | Sbjct 4 TTCTTTGATCTGGTTTCGATGGCGGGATTAGACAAAAA--C-G----CT--GGG-A-A-G 51 Query 377 ACGAAATCGGCTACAACGACGTCGTTCTTCAACAGGTCGCTTACAATTCACGGAAGAACA 436 |||||||||||||| ||| | ||||| |||||||||||||||||||||||||| |||||| Sbjct 52 ACGAAATCGGCTACGACGTCTTCGTTTTTCAACAGGTCGCTTACAATTCACGGGAGAACA 111 Query 437 GTGGTGGATTCGGGCCCCAAATCCCACAATCTCAATCCTTCTCTCAATCGTACCACCTCC 496 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 GTGGTGGATTCGAGCCCCAAATCCCACAATCTCAATCCTTCTCTCAATCGTACCACCTCC 171 Query 497 ATTACCAAATTCTACACCCCCGTAGAATCGATGGGAACTTCTCTTAAAGGCAAAGTCAAA 556 ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| Sbjct 172 ATTACCAAATTCTACACCCCCGTGGAATCTATGGGAAGTTCTCTTAAAGGCAAAGTCAAA 231 Query 557 AACCTTTGTAGATTATTCGAGACTTCCAAACCCGTTAAACCTGCCTTAGCTGAGATTCCT 616 ||||||||||||||||| |||| |||||||||||||||||| |||| |||||||||||| Sbjct 232 AACCTTTGTAGATTATTTGAGAGTTCCAAACCCGTTAAACCAGCCTCCGCTGAGATTCCT 291 Query 617 CAGAAGCAGAAATCCGGTAAATCCCTTTTACCCGAATCGCGGATATCGCCTTTTT-CGAG 675 || |||||||||||||| ||||| ||||||||||||||||||||||||||||||| | || Sbjct 292 CAAAAGCAGAAATCCGGCAAATCTCTTTTACCCGAATCGCGGATATCGCCTTTTTTC-AG 350 Query 676 CTTAAACAACTCGGTCATCCGTCTTCCCGGGACAGAGGACAGGATTGTGGTGTATTTTAC 735 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 CTTAAACAACTCGGTGATCCGTCTTCCCGGGACAGAGGACAGGATTGTGGTGTATTTTAC 410 Query 736 TAGCTTGAGAGGGATTAGACGGACGTATGAGGATTGCTATGCTGTCAGAATGATATTTAG 795 |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| Sbjct 411 TAGCTTGAGAGGGATTAGGCGGACATATGAGGATTGCTATGCTGTGAGAATGATTTTTAG 470 Query 796 AGGGTTTCGGGTTTGGATCGATGAGCGCGACGTCTCCATGGATATCGCTTATAGGAAAGA 855 |||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||||| Sbjct 471 AGGGTTTCGGGTTTGGATAGATGAGCGTGATGTCTCCATGGATATAGCTTACAGGAAAGA 530 Query 856 GTTGCAGATTGCAATGGGAGAGAAGTCTGTGTCTTTGCCTCAAGTTTTCATTATGGGCAA 915 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 531 GTTGCAGATTGCAATGGGAGAGAAGAGTGTGTCTTTGCCTCAAGTTTTCATCATGGGAAA 590 Query 916 GTATGTTGGTGGTGCTGATGTGATCAAGAGTTTGTTTGAGATTGGTGAGCTTGCTAAGAT 975 ||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| Sbjct 591 ATATGTGGGTGGTGCTGATGTGATCAAGAGTTTGTTCGAGATTGGCGAGCTCGCCAAGAT 650 Query 976 TCTTAAAGAGTTTCCAATGAGACAACCAGGGTTTGTTTGCCATTGCTGTGGGGACATTC- 1034 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct 651 TCTTAAAGAGTTTCCGATGAGACAACCAGGGTTTGTTTGCCATTGCTGCGGGGACAT-CA 709 Query 1035 GATTTGTTCCGTGTTCCAATTGTAGTGGCAGCAAGAAACTGTTTGATGAGGATGAAGATA 1094 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 710 GATTCGTTCCGTGTTCCAATTGTAGTGGGAGCAAGAAACTGTTTGATGAGGATGAAGATA 769 Query 1095 GGGTCAAGAGATGTCCTGAATGCAATGAGAATGGATTGATACGTTGTCCTGATTGCTCTT 1154 || ||||||||||||| || |||||||||||||||||||||||||||||| ||||||| | Sbjct 770 GGCTCAAGAGATGTCCCGACTGCAATGAGAATGGATTGATACGTTGTCCTCATTGCTCAT 829 Query 1155 CTTGAGATATATCA-TCAA 1172 ||||||| |||||| |||| Sbjct 830 CTTGAGAGATATCAATCAA 848 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59382691955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5