BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13840.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488208 jgi|Araly1|488208|fgenesh2_kg.6__1342__AT5G13840.1 2523 0.0
> Ahg488208 jgi|Araly1|488208|fgenesh2_kg.6__1342__AT5G13840.1
Length=1753
Score = 2523 bits (1366), Expect = 0.0
Identities = 1562/1652 (95%), Gaps = 32/1652 (2%)
Strand=Plus/Plus
Query 88 TAATCAGATCCCGCTCCTATTTCCTATTATATAATCTCTCCGACCATC-ATAATTTGACC 146
|||||||||||||||||||| | |||||||||||||||||| |||| | | |||||||||
Sbjct 46 TAATCAGATCCCGCTCCTATATACTATTATATAATCTCTCCCACCACCGA-AATTTGACC 104
Query 147 GTTGGAGAACATTACTACTTTTCGCAAAAGAAGGGaaaaaaaaaGAGAGAGATAAAGCTC 206
|||||||||||||||| | ||| ||||||||| || || | | | | |||||||
Sbjct 105 GTTGGAGAACATTACT-C-TTT-GCAAAAGAA-GG-------AA-A-A-A-A-AAAGCTC 148
Query 207 TCTTCGATTCTTTTGCAATCTTCT-CTCCTACGGTTGTTTCAATCTCCGACCAA-A---C 261
|||| ||||||||||||||||||| || || | | | | | | | ||||| | |
Sbjct 149 TCTTTGATTCTTTTGCAATCTTCTCCT-CT-C-AATCTCT-GA-C-CAAACCAACACTTC 202
Query 262 C-GTGCTTTCGAATAGAACCCAGAAATGGCATCGCCACAGAGTACCAAAACCGGTTTGAA 320
| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 203 CAGTGATTTTGAATAGAACCCAGAAATGGCATCGCCACAGAGTACCAAAACCGGCTTGAA 262
Query 321 TCTTCCCGCAGGGATGAACCAGACTTCGTTGCGTTTAGAAACGTTTTCGAGCTCATTTCG 380
||| |||||| ||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 263 TCTACCCGCACGGATGAACCAGACTTCGTTGCGTCTGGAGACGTTTTCGAGCTCATTTCG 322
Query 381 TGGGATTTCGAGTTTATCCTCGCCGTCTAAATCGACTTGCAGCGACAGATTCATACCGTG 440
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 323 TGGTATTTCGAGTTTATCCTCGCCGTCTAAATCTACTTGCAGCGACAGATTCATACCGTG 382
Query 441 CAGATCTTCTTCGAGACTCCACGCTTTCGATCTGCAGGATAAGGAACCGACTACCCCGGT 500
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 383 CAGATCTTCTTCGAGACTCCACGCTTTCGATCTGCAGGATAAGGAACCGACCACGCCGGT 442
Query 501 TAAAGAGGGAGGGAATGAAGCCTATTCTAGACTTTTGAAATCTGAGCTTTTCGGATCTGA 560
||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 443 TAAAGAGGGAGGGAACGAAGCCTACTCCAGACTTTTGAAATCTGAGCTTTTTGGATCTGA 502
Query 561 TTTTGCTTCTCCTCT-TTTGTCTCCTGCAGGTGGTCAAGGATCTGCTTCTTCTCCGATGA 619
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TTTCGCTTCTCCT-TGTTTGTCTCCTGCAGGTGGTCAAGGATCTGCTTCTTCTCCGATGA 561
Query 620 GTCCATGTACTAACATGTTGAGATTCAAGACGGATCGTTCCAATTCAAGTCCTAGTTCGC 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GTCCATGTACTAACATGTTGAGATTCAAGACGGATCGTTCCAATTCAAGTCCTAGTTCGC 621
Query 680 CGTTTTCTCCTTCCATTCTCGGAAATGATAATGGTCACTCCAGTGACTCGTCTCCGCCTC 739
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 622 CGTTTTCTCCTTCCATTCTCGGAAATGATAATGGTCTCTCCAGTGACTCGTCTCCGCCTC 681
Query 740 CGAAGCCCCCTCGCAAGGTTCCTAAAACACCTCATAAGGTCTTGGATGCTCCTTCTTTAC 799
|||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 682 CGAAACCGCCTCGCAAGGTTCCTAAAACACCTCATAAGGTCTTGGACGCTCCTTCCTTAC 741
Query 800 AAGATGACTTCTACTTGAATGTTGTGGACTGGAGTTCACAGAATGTTCTTGCCGTTGGGC 859
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 742 AAGATGACTTCTACTTGAATGTTGTGGACTGGAGCTCACAGAATGTTCTTGCGGTTGGGC 801
Query 860 TTGGTACTTGTGTTTATCTTTGGACGGCTTCCAATAGCAAAGTGACTAAGTTATGTGACC 919
||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| ||||
Sbjct 802 TTGGTACTTGTGTCTATCTTTGGACTGCTTCTAATAGCAAAGTGAGTAAGTTATGCGACC 861
Query 920 TAGGGCCTAATGACAGTGTGTGCTCGGTTCAGTGGACACGGGAAGGTTCATATATATCTA 979
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TAGGGCCTAATGACAGCGTGTGCTCGGTTCAGTGGACACGGGAAGGTTCATATATATCTA 921
Query 980 TTGGTACAAGTCATGGTCAGGTTCAGGTTTGGGACGGAACACAGTGCAAGAGAGTCCGAA 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TTGGTACAAGTCATGGTCAGGTTCAGGTTTGGGACGGAACACAGTGCAAGAGAGTCCGAA 981
Query 1040 CCATGGGAGGTCATCAAACAAGAACTGGTGTCTTGGCATGGAACTCAAGGATCTTATCAT 1099
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 982 CCATGGGAGGTCATCAGACGAGAACTGGTGTCTTGGCATGGAACTCAAGAATCTTATCAT 1041
Query 1100 CAGGGAGCAGAGACAGAAACATCCTTCAGCATGATATCCGAGTCCAGAGCGATTTTGTCA 1159
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1042 CAGGGAGCAGAGACAGAAACATCCTTCAACATGATATCCGAGTCCAGAGCGATTATGTCA 1101
Query 1160 GCAAACTCGTGGGCCACAAATCTGAAGTCTGCGGTCTGAAATGGTCTCATGATGATAGAG 1219
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1102 GCAAACTCGTGGGGCACAAATCTGAAGTCTGCGGTCTGAAATGGTCTCACGATGATAGAG 1161
Query 1220 AGCTTGCGTCTGGAGGCAATGATAATCAGTTATTGGTATGGAACAATCATTCACAGCAAC 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AGCTTGCGTCTGGAGGCAATGATAATCAGTTATTGGTATGGAACAATCATTCACAGCAAC 1221
Query 1280 CTATTCTGAAGCTGACTGAGCATACAGCAGCGGTTAAGGCAATTACATGGTCTCCTCATC 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 CTATTCTGAAGCTGACTGAGCATACAGCAGCGGTTAAGGCAATTACATGGTCTCCTCATC 1281
Query 1340 AGAGCAGCCTCCTTGCTTCGGGAGGTGGAACCGCAGACAGATGCATTAGATTCTGGAACA 1399
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 AGAGCAGCCTCCTTGCTTCAGGAGGTGGAACCGCAGACAGATGCATTAGATTCTGGAACA 1341
Query 1400 CGACAAACGGAAATCAGTTAAACAGCATCGACACTGGGAGCCAGGTCTGCAATCTGGCGT 1459
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1342 CGACAAACGGACATCAGTTAAACAGCATCGACACTGGGAGCCAGGTCTGCAATCTGGCAT 1401
Query 1460 GGAGCAAGAATGTTAACGAGATAGTGAGTACTCATGGATACTCTCAAAACCAAATCATGC 1519
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1402 GGAGCAAGAATGTTAACGAGATAGTGAGTACTCATGGCTACTCTCAAAACCAAATCATGC 1461
Query 1520 TCTGGAAGTACCCATCCATGTCAAAGGTTGCAACACTTACGGGCCACAGTATGAGAGTAC 1579
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1462 TCTGGAAGTACCCATCCATGTCAAAGGTTGCAACACTTACTGGCCACAGTATGAGAGTAC 1521
Query 1580 TTTACTTGGCTACGTCACCTGATGGCCAGACTATAGTGACCGGAGCAGGAGATGAGACCC 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TTTACTTGGCTACGTCACCTGATGGCCAGACTATAGTGACCGGAGCAGGAGATGAGACCC 1581
Query 1640 TGCGGTTTTGGAACGTCTTTCCTTCAGTAAAAATGCAGACACCAGTGAAAGACACAGGTC 1699
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 1582 TGCGGTTTTGGAACGTCTTCCCTTCAGTGAAAATGCAGACACCAGTGAAGGACACAGGTC 1641
Query 1700 TCTGGTCATTGGGGAGGACACAGATCCGATAA 1731
| ||||||||||||||||||||||||||||||
Sbjct 1642 TATGGTCATTGGGGAGGACACAGATCCGATAA 1673
Score = 73.1 bits (39), Expect = 7e-12
Identities = 51/56 (91%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 10 GCTAGGACCCAAGATCTGACCGTTGGAGCATGAACTCCAGAAATCGATAAT-AGAT 64
||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 1 GCTAGGACCAAAGATCTGACCGTTGGAGCATGAACTCCACAAATC--TAATCAGAT 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5