BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13860.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488210 jgi|Araly1|488210|fgenesh2_kg.6__1344__AT5G13860.1 1897 0.0
> Ahg488210 jgi|Araly1|488210|fgenesh2_kg.6__1344__AT5G13860.1
Length=1252
Score = 1897 bits (1027), Expect = 0.0
Identities = 1146/1204 (95%), Gaps = 6/1204 (0%)
Strand=Plus/Plus
Query 40 TCGTCATCTGTCGTCGTCTTCAAGTAATCGGAGTTTGACTTGCTAATGGCTCCTCCTCCG 99
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 4 TCGTCATCTGTCGTCGTCTTCAAGTAATCGGAATTTGACTTGCCAATGGCTCCTCCTCCG 63
Query 100 GCGAAGATGCAAGAGATCCACCAATTCCTCTCCTCCGCACTCACCCAGCGTGGCCCTTCC 159
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 64 GCGAAGATGCAAGAGATCCACCAATTCCTTTCCTCCGCACTCTCCCAACGTGGCCCTTCC 123
Query 160 GCTCTTCCATACGCCGAGAACACCAAGTCGCTAATCCGTCAACACCTCCTCAACCTAATC 219
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GCTCTCCCCTACGCCGAGACCACCAAGTCGCTAATCCGTCAACACCTCCTCAACCTAATC 183
Query 220 TCTTCCTACACTTCCCTCGACCCCAAAACGGCAACGTTTACACACAACGATGGCCGATCC 279
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 184 TCTTCCTACACTTCCCTCGACCCCAAAACGGCGACGTTTACACACAACGATGGCCGATCC 243
Query 280 GTGATTCTCCTCCAAGCCGACGGTACAATCCCGATGCCTTTCCAAGGCGTCAGCTACAAC 339
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 244 GTGATCCTCCTCCAAGCCGACGGTACAATCCCGATGCCTTTCCAAGGCGTCAACTACAAC 303
Query 340 ATCCCCGTCGTGATCTGGCTCCTCGAATCTTACCCTCAGTATCCTCCTTGCGTTTACGTG 399
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 304 ATCCCCGTCGTCATCTGGCTCCTCGAATCTTACCCTCACTATCCTCCTTGCGTCTACGTG 363
Query 400 AATCCTACACGCGACATGATCATCAAACGACCTCACTCTAATGTCTCTCCTTCTGGACTC 459
|| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 364 AACCCTACGCGCGACATGATCATCAAGCGACCTCACACTAATGTCTCTCCTTCTGGACTC 423
Query 460 GTCTCTCTTCCTTACCTCCAAAATTGGATTTACCCTAGCTCCAATCTCGTAGATCTCGCC 519
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 424 GTCTCTCTTCCTTACCTTCAAAATTGGGTTTACCCTAGCTCCAATCTCGTAGATCTCGCC 483
Query 520 TCTCATCTCAGCGCCGCCTTCTCTCGTGATCCGCCGCTTTACTCTCAGCGCCGTCCTCCT 579
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 484 TCTCATCTCAGCGCCGCCTTCTCCCGTGATCCGCCGCTTTACTCTCAACGCCGTCCTCCT 543
Query 580 CCGCAACCGTCTCCTTCGATCGGATCTGGATACTCGAGACCTCTTCCTCCTCGCCAGACG 639
||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 544 CCGCAACCGTCTCCTTCCATCGGATCTGGATACTCGAGACCTCTTCATCCTCACCAGACG 603
Query 640 GATGATGCGGCAGAGGTATATAAGAAGAACGCTATCAACAGGATTGTTGAGATGGTTCAT 699
||||||||||| ||||| |||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 604 GATGATGCGGCGGAGGTTTATAAGAAGAACGCGATCAACAAGATTGTGGAGATGGTTCAT 663
Query 700 GGTGATATTGTATTGATGAGGAGTGCTAGAGAAGTGGAGACGGAAGGATTACTGAGTTTA 759
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGTGATCTTGTATTGATGAGGAGTGCTAGAGAAGTGGAGACGGAAGGATTACTGAGTTTA 723
Query 760 CAATCT-GATCTTAAGAGAAGAGAAGAGGAGATCAACAATGGTTTTAAGGAGATGGTGAT 818
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 724 CAATCTGGA-CTTAAGAGAAGAGAAGAGGAGATCAACAATGGTTTAAAGGAGATGGTGAA 782
Query 819 TGAGAAAGAGACCTTAGAGCAGCAACTACAGGTTATTGCTATGAATACTGATGTTCTTGG 878
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 783 TGAGAAAGAGACCTTAGAGCAGCAATTACAGGTTATTGCTATGAATACTGATGTTCTTGG 842
Query 879 CTCTTGGATTAGGGAGAATCAAGGGAAAGCCAAGGATTTGCTAGTGGATTTGGATGTTGA 938
||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 843 TTCTTGGATTAGGGAGAATCAAGGGAAAGCTAAGAATTTGCTAGTAGATTTGGATGTTGA 902
Query 939 TGATTCATTTGAATGCATTGACTCATTGTCTAAGCAGATGTTAGAGTGTACTGCATTGGA 998
|||| |||||||||||| ||| ||||||| || ||||||||||||||||||||| ||||
Sbjct 903 TGATGCATTTGAATGCAGTGAGACATTGTCCAAACAGATGTTAGAGTGTACTGCACTGGA 962
Query 999 TTTAGCTATTGAAGATGTTGTTTATTCCATGGATAAATCGTTTAGAGATGGTTCGTTACC 1058
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 963 TTTAGCCATTGAAGATGTTGTTTATTCCATGGATAAATCGTTTCGAGATGGTTCGTTGTC 1022
Query 1059 GTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGGGAGCAGTTCTTCCACCGAGC 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGGGAGCAGTTCTTCCACCGAGC 1082
Query 1119 CACGGCTGAGAAAGTTAGGGAGATACAGATGGATGCTCAGGTTGCTTCCATTGCAGCTAG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CACGGCTGAGAAAGTTAGGGAGATACAGATGGATGCTCAGGTTGCTTCCATTGCAGCTAG 1142
Query 1179 GTTGCATTCGTGATA-CTTAAGCAAAG-ATTTTTTGGTGATTACTATTTCTATTCGATTT 1236
||||||||||||| | ||| |||| | |||||| |||||||||||||||||||||||||
Sbjct 1143 GTTGCATTCGTGAAAACTTGGGCAA-GTATTTTT-GGTGATTACTATTTCTATTCGATTT 1200
Query 1237 TTAT 1240
||||
Sbjct 1201 TTAT 1204
Score = 82.4 bits (44), Expect = 8e-15
Identities = 49/51 (96%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 1262 TATACACCAGTGCATATACAAAGTTG-AATTGATCACGTTTTGGGTTTATC 1311
|||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1202 TATACACCAGTGCATATACAAAGTTGAAATCGATCACGTTTTGGGTTTATC 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5