BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13930.1 Length=1491 Score E Sequences producing significant alignments: (Bits) Value Ahg488219 jgi|Araly1|488219|fgenesh2_kg.6__1353__AT5G13930.1 2324 0.0 > Ahg488219 jgi|Araly1|488219|fgenesh2_kg.6__1353__AT5G13930.1 Length=1490 Score = 2324 bits (1258), Expect = 0.0 Identities = 1423/1500 (95%), Gaps = 21/1500 (1%) Strand=Plus/Plus Query 3 AAATACACCTAACTTGTTTAGTACACAACAGCAACATCAAACTCTAATAAACCCAAGTTG 62 |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 1 AAATACACCTAACTTGTTTAGTACAC-A-A-CAACATCAAACTCTAATAAACCCAAGTTG 57 Query 63 GTGTATACTATAATGGTGATGGCT---GGTGCTTCTTCTTTGGATGAGATCAGACAGGCT 119 |||| || |||||||||||||||| || || ||||| ||||||||||||||| ||||| Sbjct 58 GTGTGTAATATAATGGTGATGGCTGCAGGAGCGTCTTCGTTGGATGAGATCAGAAAGGCT 117 Query 120 CAGAGAGCTGATGGACCTGCAGGCATCTTGGCTATTGGCACTGCTAACCCTGAGAACCAT 179 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 118 CAGAGAGCTGATGGACCTGCAGGGATCTTGGCTATTGGCACGGCTAACCCTGAGAACCAT 177 Query 180 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGCATCACCAACAGTGAACACATGACC 239 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 178 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGAATCACCAACAGTGAACACATGACC 237 Query 240 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGACAATTCGGAAACGTCACATG 299 |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 238 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGATGATTCGGAAACGCCACATG 297 Query 300 CATCTGACGGAGGAATTCCTCAAGGAAAACCCACACATGTGTGCTTACATGGCTCCTTCT 359 |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 298 CATCTGACAGAGGACTTCCTCAAGGAAAACCCACACATGTGCGCTTACATGGCTCCTTCT 357 Query 360 CTGGACACCAGACAGGACATCGTGGTGGTCGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 419 || |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 358 CTAGACACCCGACAGGACATCGTTGTGGTTGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 417 Query 420 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 477 Query 480 ACTACCTCCGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 539 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 ACTACCTCTGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 537 Query 540 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAGCAAGGTTGCTTCGCCGGCGGTACTGTC 599 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 538 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAACAAGGTTGCTTCGCCGGCGGCACTGTC 597 Query 600 CTCCGTATCGCTAAGGATCTCGCCGAGAACAATCGTGGAGCACGTGTCCTCGTTGTCTGC 659 ||||||||||||||||| || ||||||||||| || ||||| |||||||| || |||||| Sbjct 598 CTCCGTATCGCTAAGGACCTTGCCGAGAACAACCGCGGAGCTCGTGTCCTTGTCGTCTGC 657 Query 660 TCTGAGATCACAGCCGTTACCTTCCGTGGTCCCTCTGACACCCACCTTGACTCCCTCGTC 719 |||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||| Sbjct 658 TCTGAGATCACAGCTGTCACCTTCCGTGGCCCCTCTGACACCCACCTCGACTCCCTCGTC 717 Query 720 GGTCAGGCTCTTTTCAGTGATGGCGCCGCCGCACTCATTGTGGGGTCGGACCCTGACACA 779 |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||| Sbjct 718 GGTCAGGCTCTTTTCAGTGACGGCGCTGCCGCACTCATCGTGGGCTCGGACCCTGACACA 777 Query 780 TCTGTCGGAGAGAAACCCATCTTTGAGATGGTGTCTGCCGCTCAGACCATCCTTCCAGAC 839 ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 778 TCTGTCGGAGAGAAACCCATCTTCGAGATGGTGTCCGCCGCCCAGACCATCCTGCCAGAC 837 Query 840 TCTGATGGTGCCATAGACGGACATTTGAGGGAAGTTGGTCTCACCTTCCATCTCCTCAAG 899 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 838 TCTGATGGTGCCATAGACGGACACTTGAGGGAAGTGGGTCTCACCTTCCATCTCCTCAAG 897 Query 900 GATGTTCCCGGCCTCATCTCCAAGAACATTGTGAAGAGTCTAGACGAAGCGTTTAAACCT 959 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 898 GATGTCCCCGGCCTCATCTCGAAGAACATTGTTAAGAGTCTAGACGAAGCGTTTAAACCT 957 Query 960 TTGGGGATAAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1019 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TTGGGGATTAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1017 Query 1020 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1077 Query 1080 GTGTTGAGCGAGTATGGAAACATGTCGAGCGCGTGCGTTCTCTTCATACTAGACGAGATG 1139 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1078 GTGTTGAGCGAGTATGGAAACATGTCTAGCGCGTGCGTTCTCTTTATACTAGACGAGATG 1137 Query 1140 AGGAGGAAGTCAGCTAAGGATGGTGTGGCCACGACAGGAGAAGGGTTGGAGTGGGGTGTC 1199 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1138 AGGAGGAAGTCAGCCAAGGATGGTGTGGCCACTACAGGAGAAGGGTTGGAGTGGGGTGTC 1197 Query 1200 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1257 Query 1260 TAA-ACAGAACGCTTGCCTTCTATCTGCCTACCTAC-CTACGCAAAACTTTAATCCTGTC 1317 ||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1258 TAATA-AGAACGCTTTCCTTCTATCTGCCTACCTACACTACGCAAAACTTTAATCCTGTC 1316 Query 1318 TTATGTTTTATATAATATAATCATTATATGTTTACGCAATAATTAAGGAAGAATTCATTT 1377 |||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| Sbjct 1317 TTATGTTTTATATAATATAATC-T-AT--GTTTATGCAATAATTAAGGAAGAATTCATTT 1372 Query 1378 GATGTGATATGTGAT---A--TGTGCTGGACAGGTCTATTCGACTGtttttgtactctct 1432 ||||||||||||||| | |||||||||||||||||||||||| ||||||||| || | Sbjct 1373 GATGTGATATGTGATTTGAAATGTGCTGGACAGGTCTATTCGACTATTTTTGTAC-CT-T 1430 Query 1433 tt-tttgtgtctttttACAATATTAAATCTATGGGTCTTGAATGACATCAAATCTTTGTT 1491 || |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 1431 TTGTTTGTGTCTTTTTACAATATTAAATCTACGGGTCTTGAATGACATGAAATCTTTGTT 1490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55802208925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5