BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14040.1 Length=1649 Score E Sequences producing significant alignments: (Bits) Value Ahg940873 jgi|Araly1|940873|scaffold_601417.1 1901 0.0 Ahg343089 jgi|Araly1|343089|fgenesh1_pg.C_scaffold_3002852 134 3e-30 > Ahg940873 jgi|Araly1|940873|scaffold_601417.1 Length=1165 Score = 1901 bits (1029), Expect = 0.0 Identities = 1126/1171 (96%), Gaps = 13/1171 (1%) Strand=Plus/Plus Query 87 TCCTTCCTCCGCCGCCGCCATGGAATCTCCGAAGAATTCTCTGATCCCGAGCTTCCTCTA 146 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TCCTCCCTCCGCCGCCGCGATGGAATCTCCGAAGAATTCTCTGATCCCGAGCTTCCTCTA 61 Query 147 TTCATCATCTTCATCTCCGAGATCTTTCCTCCTCGACCAGGTGCTCAATTCCAACTCCAA 206 ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| Sbjct 62 TTCATCATCTTCATCCCCGAGATCCTTCCTCCTCGACCAGGTGCTGAATTCCAACTCCAA 121 Query 207 CGCTGCATTCGAGAAAT-CTCC-TTCTCCG-GCCCCGCGTTCC-TCTCCTACGTCGATGA 262 |||||||||| | | |||| ||| || | | ||| ||||| |||||||||| Sbjct 122 CGCTGCATTC--G-CCTCCTCCAATCT-CGAG-AAATC--TCCTTCTCCGACGTCGATGA 174 Query 263 TTTCTCGGAAGAATTTCCTTATTGCATCTCCCACCGAGCCAGGGAAGGGGATCGAGATGT 322 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 175 TTTCTCGGAAGAATTTCCTTATTGCGTCTCCCACCGAGCCAGGGAAGGGGATCGAGATGT 234 Query 323 ATTCACCTGCCTTCTACGCTGCTTGTACCTTTGGTGGAATTCTCAGCTGTGGTCTTACTC 382 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 235 ATTCACCTGCCTTCTACGCTGCTTGTACCTTCGGTGGAATTCTCAGCTGTGGTCTCACTC 294 Query 383 ACATGACCGTGACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCCAGCGAAGT 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 ACATGACCGTGACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCCAGCGAAGT 354 Query 443 ACAAGAGCATCTCGTCTGGTTTTGGAATTTTGCTGAAAGAGCAAGGAGTCAAAGGCTTTT 502 |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 355 ACAAGAGCATTTCTTCTGGTTTTGGAATTTTGCTGAAAGAGCAAGGTGTCAAAGGCTTTT 414 Query 503 TCCGTGGATGGGTTCCTACTCTTTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGAT 562 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 415 TCCGTGGATGGGTTCCTACTCTGTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGAT 474 Query 563 TCTACGAGTACTTTAAGAAGACTTACTCTGACCTTGCTGGACCTGAGTACACTGCCAAAT 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 TCTACGAGTACTTTAAGAAGACTTACTCTGACCTTGCTGGACCTGAGTACACTGCCAAAT 534 Query 623 ACAAGACTCTCATCTACCTTGCTGGTTCTGCTTCTGCTGAGATCATTGCCGATATTGCAC 682 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 535 ACAAAACTCTCATCTACCTTGCTGGTTCTGCTTCTGCTGAGGTCATTGCCGATATTGCAC 594 Query 683 TTTGCCCATTTGAAGCTGTGAAGGTTCGTGTTCAGACACAGCCTGGATTTGCTAGGGGGA 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TTTGCCCATTTGAAGCTGTGAAGGTTCGTGTTCAGACACAGCCTGGATTTGCTAGGGGGA 654 Query 743 TGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGCTTGTATAAGGGTC 802 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 655 TGTCTGATGGATTTCCCAAGTTTATCAAGTCTGAAGGATACGGAGGCTTGTATAAGGGTC 714 Query 803 TTGCTCCACTCTGGGGACGTCAGATTCCTTACACTATGATGAAGTTTGCTTCCTTTGAGA 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 TTGCTCCACTCTGGGGACGTCAGATTCCTTACACTATGATGAAGTTTGCTTCCTTTGAGA 774 Query 863 CCATTGTTGAGATGATTTACAAGTACGCAATCCCCAACCCAAAGAGTGAGTGCAGCAAAG 922 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 775 CCATTGTTGAGATGATCTACAAGTACGCAATCCCCAACCCGAAGAGTGAGTGCAGCAAAG 834 Query 923 GTCTGCAACTCGGAGTGAGTTTTGCCGGAGGTTACGTTGCCGGAGTGTTCTGTGCCATCG 982 |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 835 GTCTACAACTCGGGGTGAGTTTTGCAGGAGGTTACGTTGCCGGAGTGTTCTGTGCAATCG 894 Query 983 TTTCTCATCCAGCAGACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTG 1042 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 895 TTTCTCATCCAGCAGACAATCTGGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTG 954 Query 1043 GAGATGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTTAGAA 1102 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 955 GAGATGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTAAGAA 1014 Query 1103 TTGTGATGATCGGGACGTTGACTGGAGCACAGTGGGGATTATACGATGCCTTCAAAGTGT 1162 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 TTGTGATGATCGGGACATTGACTGGAGCACAGTGGGGATTATACGATGCCTTCAAAGTGT 1074 Query 1163 TTGTTGGCCTGCCAACCACTGGTGGTGTTGCTCCAGCTCCTGCCATCGCAGCTACTGAAG 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 TTGTTGGCCTGCCAACCACTGGTGGTGTTGCTCCAGCTCCTGCCATCGCAGCTACTGAAG 1134 Query 1223 CCAAAGCCTAAACAATGACGAAAAAGG-TTA 1252 ||||||||||| ||||||||||||||| ||| Sbjct 1135 CCAAAGCCTAA-CAATGACGAAAAAGGGTTA 1164 > Ahg343089 jgi|Araly1|343089|fgenesh1_pg.C_scaffold_3002852 Length=2835 Score = 134 bits (72), Expect = 3e-30 Identities = 102/116 (88%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 718 ACACAGCCTGGATTTGCTAGGGGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAA 777 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| Sbjct 2395 ACACAGCCTGGATTTGCCAGGGGAATGTCTGATGGATTTCCCAAGTTTATCAAGTCTGAA 2454 Query 778 GGA-TACGGAGGCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT 832 || | ||||| ||||| ||||| ||| |||||| ||||| ||||||||||||| Sbjct 2455 GGTCTT-GGAGGTTTGTACAAGGGAATTGGTCCACTTTGGGG-CGTCAGATTCCTT 2508 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61820467635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5