BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14070.1 Length=679 Score E Sequences producing significant alignments: (Bits) Value Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1 773 0.0 Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1 279 1e-74 > Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1 Length=501 Score = 773 bits (418), Expect = 0.0 Identities = 477/505 (94%), Gaps = 6/505 (1%) Strand=Plus/Plus Query 1 CAACCAActctcacacaaattctctcgctctctcactctcttattctctttctctttttc 60 |||||||||| ||| || ||||||||||||||| | ||| ||||||||||| || | Sbjct 1 CAACCAACTCACACCCACATTCTCTCGCTCTCT--GTAGCTTCTTCTCTTTCTC--TTCC 56 Query 61 tctAAGAATAC--aaaaaaaGATGCAATACAAAACAGAAACTCGAGGGTCGTTGTCCTAC 118 ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 57 TCTAAAAATACAAAAAAAAAAATGCAATACAAAACAGAAACTCGAGGGTCGTTGTCCTAC 116 Query 119 AACAACAACAGTAAGGTGATGAACAACATGAATGTGTTTCCGTCGGAGACACTGGCGAAG 178 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 AACAACAATAGCAAGGTGATGAACAACATGAATGTGTTTCCGTCGGAGACACTGGCGAAG 176 Query 179 ATAGAGTCGATGGCGGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACTTGCTGCATG 238 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 177 ATAGAGTCGATGGCTGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACGTGCTGCATG 236 Query 239 TGCCATGCCATCAAGCGTCTCTTCCGTGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 298 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 237 TGCCACGCCATCAAGCGTCTCTTCCGTGGAATGGGGGTCAGCCCCGCCGTCCACGAGCTC 296 Query 299 GACCTCCTCCCTTACGGAGTTGAAATCCACCGAGCTCTCCTCCGTCTCCTTGGCTGTTCC 358 ||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||| Sbjct 297 GACCTCCTCCCTTACGGCGTTGAAATCCACCGAGCTCTCATTCGTCTCCTGGGCTGTTCC 356 Query 359 AGCGGTGGCGCCACATCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGATGGTA 418 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 AGCGGTGGCGCTACTTCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGATGGTA 416 Query 419 GGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAAA 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAAA 476 Query 479 GATGCTGGCGCTCTTTGGCTCTGAT 503 ||||||||||||||||||||||||| Sbjct 477 GATGCTGGCGCTCTTTGGCTCTGAT 501 > Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1 Length=619 Score = 279 bits (151), Expect = 1e-74 Identities = 269/326 (83%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 179 ATAGAGTCGATGGCGGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACTTGCTGCATG 238 ||||||||| ||||||| |||| |||||||| || |||||||||||||| ||||||||| Sbjct 111 ATAGAGTCGCTGGCGGCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATG 170 Query 239 TGCCATGCCATCAAGCGTCTCTTCCGTGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 298 ||||| ||| | ||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 171 TGCCACGCCGTGAAGGGTCTCTTCCGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 230 Query 299 GACCTCCTCCCTTACGGAGTTGAAATCCACCGAGCTCTCCTCCGTCTCCTTGGCTGTTCC 358 ||||||| ||| ||||| | || ||||| ||||| ||| | ||||| || ||||| ||| Sbjct 231 GACCTCCACCCCTACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTTCTCGGCTGCTCC 290 Query 359 AGCGGTGGCGCCACATCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGA-TGGT 417 || | | | | ||||| ||| | |||||||| || |||||||| || || | |||| Sbjct 291 GGC--T--C-CT-CTTCTCCAGGGTCTCTTCCGGTCGTCTTCATCGGCGGCAA-ACTGGT 343 Query 418 AGGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAA 477 ||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 344 TGGAGCTATGGACAGAGTCATGGCTTCTCACATCAACGGCTCTCTCGTTCCTCTCCTCAA 403 Query 478 AGATGCTGGCGCTCTTTGGCTCTGAT 503 ||| || || ||||| |||||||||| Sbjct 404 AGACGCCGGAGCTCTCTGGCTCTGAT 429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24932387718 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5